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Spata1 Gene Detail
Summary
  • Symbol
    Spata1
  • Name
    spermatogenesis associated 1
  • Synonyms
    4921536I21Rik, SP-2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918201
    NCBI Gene: 70951
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:146162951-146205508 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 71.30 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    972 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918201
 protein coding gene Chr3:146162951-146205548 (-)
129S1/SvImJ MGP_129S1SvImJ_G0027972
 protein coding gene Chr3:149974731-150021705 (-)
A/J MGP_AJ_G0027931
 protein coding gene Chr3:144586038-144628087 (-)
AKR/J MGP_AKRJ_G0027897
 protein coding gene Chr3:148447761-148490768 (-)
BALB/cJ MGP_BALBcJ_G0027943
 protein coding gene Chr3:144412005-144453754 (-)
C3H/HeJ MGP_C3HHeJ_G0027673
 protein coding gene Chr3:148815828-148857946 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028386
 protein coding gene Chr3:154998351-155043447 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025724
 protein coding gene Chr3:139649987-139689562 (-)
CAST/EiJ MGP_CASTEiJ_G0027126
 protein coding gene Chr3:148795716-148841044 (-)
CBA/J MGP_CBAJ_G0027648
 protein coding gene Chr3:160507486-160553437 (-)
DBA/2J MGP_DBA2J_G0027788
 protein coding gene Chr3:143738113-143782107 (-)
FVB/NJ MGP_FVBNJ_G0027755
 protein coding gene Chr3:141156835-141197934 (-)
LP/J MGP_LPJ_G0027899
 protein coding gene Chr3:151346320-151403950 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027788
 protein coding gene Chr3:168780940-168831401 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028445
 protein coding gene Chr3:148032769-148078445 (-)
PWK/PhJ MGP_PWKPhJ_G0026849
 protein coding gene Chr3:143593835-143637464 (-)
SPRET/EiJ MGP_SPRETEiJ_G0026677
 protein coding gene Chr3:146198301-146243244 (-)
WSB/EiJ MGP_WSBEiJ_G0027206
 protein coding gene Chr3:149005378-149054658 (-)



Homology
more
  • Human Ortholog
    SPATA1, spermatogenesis associated 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SPATA1, spermatogenesis associated 1
  • Synonyms
    SP-2, SPAP1
  • Links
    NCBI Gene ID: 100505741
    neXtProt AC: NX_Q5VX52
    UniProt: Q5VX52

  • Chr Location
    chr1:84506300-84567379 (+)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    19
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000028188 Ensembl Gene Model | MGI Sequence Detail 42558 C57BL/6J ±  kb
transcript ENSMUST00000197980 Ensembl | MGI Sequence Detail 1807 Not Applicable  
polypeptide ENSMUSP00000142800 Ensembl | MGI Sequence Detail 444 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • Protein Ontology
    PR:000015478 spermatogenesis-associated protein 1
    (term hierarchy)
  • InterPro Domains
    IPR039062 Spermatogenesis-associated protein 1
    IPR031478 Spermatogenesis-associated protein 1, C-terminal domain
Molecular
Reagents
less
  • All nucleic 19
    cDNA 19

    Microarray probesets 3
Other
Accession IDs
less
MGI:2139945
References
more
  • Summaries
    All 28
    Developmental Gene Expression 1
    Diseases 1
    Gene Ontology 1
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:286593 Zhang L, et al., Mouse spermatogenesis-associated protein 1 (SPATA1), an IFT20 binding partner, is an acrosomal protein. Dev Dyn. 2020 Apr;249(4):543-555
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory