4931415C17Rik Gene Detail

Summary

• Symbol
  4931415C17Rik
• Name
  RIKEN cDNA 4931415C17 gene
• Synonyms
  2810048G06Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1918216
  NCBI Gene: 70966
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:12722427-12729225 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 5.73 cM, cytoband A2
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  365 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918216	lncRNA gene	Chr8:12722186-12729229 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015706	unclassified non-coding RNA gene	Chr8:9972754-9979779 (+)
A/J	MGP_AJ_G0015684	unclassified non-coding RNA gene	Chr8:9614560-9621605 (+)
AKR/J	MGP_AKRJ_G0015647	unclassified non-coding RNA gene	Chr8:9881926-9888961 (+)
BALB/cJ	MGP_BALBcJ_G0015645	unclassified non-coding RNA gene	Chr8:9753073-9760115 (+)
C3H/HeJ	MGP_C3HHeJ_G0015467	unclassified non-coding RNA gene	Chr8:10090318-10097364 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016100	unclassified non-coding RNA gene	Chr8:10341101-10349110 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013829	unclassified non-coding RNA gene	Chr8:9123488-9124596 (+)
CAST/EiJ	MGP_CASTEiJ_G0015022	unclassified non-coding RNA gene	Chr8:9839285-9847673 (+)
CBA/J	MGP_CBAJ_G0015448	unclassified non-coding RNA gene	Chr8:10772465-10781264 (+)
DBA/2J	MGP_DBA2J_G0015544	unclassified non-coding RNA gene	Chr8:9578144-9585178 (+)
FVB/NJ	MGP_FVBNJ_G0015550	unclassified non-coding RNA gene	Chr8:9569928-9576934 (+)
LP/J	MGP_LPJ_G0015624	unclassified non-coding RNA gene	Chr8:9893059-9901188 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015572	unclassified non-coding RNA gene	Chr8:11045346-11052374 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016142	unclassified non-coding RNA gene	Chr8:9930401-9937432 (+)
PWK/PhJ	MGP_PWKPhJ_G0014804	unclassified non-coding RNA gene	Chr8:9609121-9617451 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014593	unclassified non-coding RNA gene	Chr8:9822142-9830846 (+)
WSB/EiJ	MGP_WSBEiJ_G0015127	unclassified non-coding RNA gene	Chr8:9970949-9977980 (+)

Homology

• Gene Tree
  4931415C17Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000054910 (Evidence)
• NCBI Gene
  70966

Representative Sequences			Length	Strain/Species
genomic	70966	NCBI Gene Model | MGI Sequence Detail	6799	C57BL/6J
transcript	NR_166502	RefSeq | MGI Sequence Detail	2251	C57BL/6

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:1919931

References

• Summaries
  All 13
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 4931415C17Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr2493	Chr8:12722426-12722457 (+)	15 bp