4931406G06Rik Gene Detail

Summary

• Symbol
  4931406G06Rik
• Name
  RIKEN cDNA 4931406G06 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918228
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr16:90841544-90853565 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 52.34 cM, cytoband C3.3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  489 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918228	lncRNA gene	Chr16:90841544-90853565 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015327	unclassified non-coding RNA gene	Chr16:92026235-92038249 (+)
A/J	MGP_AJ_G0015302	unclassified non-coding RNA gene	Chr16:87734706-87746727 (+)
AKR/J	MGP_AKRJ_G0015265	unclassified non-coding RNA gene	Chr16:90374015-90386036 (+)
BALB/cJ	MGP_BALBcJ_G0015265	unclassified non-coding RNA gene	Chr16:88254999-88267020 (+)
C3H/HeJ	MGP_C3HHeJ_G0015089	unclassified non-coding RNA gene	Chr16:90940788-90952809 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015719	unclassified non-coding RNA gene	Chr16:95009243-95021264 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013461	unclassified non-coding RNA gene	Chr16:85440139-85452558 (+)
CAST/EiJ	MGP_CASTEiJ_G0014640	unclassified non-coding RNA gene	Chr16:91493130-91505240 (+)
CBA/J	MGP_CBAJ_G0015068	unclassified non-coding RNA gene	Chr16:99065733-99077774 (+)
DBA/2J	MGP_DBA2J_G0015163	unclassified non-coding RNA gene	Chr16:87634104-87646146 (+)
FVB/NJ	MGP_FVBNJ_G0015170	unclassified non-coding RNA gene	Chr16:86764077-86776067 (+)
LP/J	MGP_LPJ_G0015243	unclassified non-coding RNA gene	Chr16:91721782-91733796 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015196	unclassified non-coding RNA gene	Chr16:103630503-103642493 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015759	unclassified non-coding RNA gene	Chr16:90886039-90898029 (+)
PWK/PhJ	MGP_PWKPhJ_G0014430	unclassified non-coding RNA gene	Chr16:87807107-87819281 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014218	unclassified non-coding RNA gene	Chr16:90450213-90462262 (+)
WSB/EiJ	MGP_WSBEiJ_G0014747	unclassified non-coding RNA gene	Chr16:91132036-91144058 (+)

Homology

• Gene Tree
  4931406G06Rik
  

Human Diseases

• References
  4 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  69 phenotype references
  

• All Mutations and Alleles
  8
• Spontaneous
  1
• Targeted
  6
• Genomic Mutations
  8 involving 4931406G06Rik
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000085398 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085398	Ensembl Gene Model | MGI Sequence Detail	12022	C57BL/6J
transcript	ENSMUST00000147848	Ensembl | MGI Sequence Detail	1252	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 77

  Diseases 4

  Phenotypes 69
• Earliest
  J:42265 Huang TT, et al., Superoxide-mediated cytotoxicity in superoxide dismutase-deficient fetal fibroblasts. Arch Biochem Biophys. 1997 Aug 15;344(2):424-32
• Latest
  J:335294 Redhead Y, et al., Craniofacial dysmorphology in Down syndrome is caused by increased dosage of Dyrk1a and at least three other genes. Development. 2023 Apr 15;150(8):dev201077

TSS for 4931406G06Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr139326	Chr16:90840369-90840391 (+)	-1,164 bp
Tssr139327	Chr16:90840415-90840478 (+)	-1,097 bp
Tssr139328	Chr16:90843832-90843834 (+)	2,289 bp
Tssr139329	Chr16:90845170-90845173 (+)	3,628 bp
Tssr139330	Chr16:90853464-90853467 (+)	11,922 bp