4933421A08Rik Gene Detail

Summary

• Symbol
  4933421A08Rik
• Name
  RIKEN cDNA 4933421A08 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918347
  NCBI Gene: 71097
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:122855102-122857268 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 57.35 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  102 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918347	lncRNA gene	Chr4:122855102-122857268 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015573	unclassified non-coding RNA gene	Chr4:124348335-124350501 (+)
A/J	MGP_AJ_G0015550	unclassified non-coding RNA gene	Chr4:119500020-119502177 (+)
AKR/J	MGP_AKRJ_G0015514	unclassified non-coding RNA gene	Chr4:122724427-122726593 (+)
BALB/cJ	MGP_BALBcJ_G0015512	unclassified non-coding RNA gene	Chr4:120080003-120082165 (+)
C3H/HeJ	MGP_C3HHeJ_G0015334	unclassified non-coding RNA gene	Chr4:122848242-122850434 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015965	unclassified non-coding RNA gene	Chr4:129163477-129165643 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013701	unclassified non-coding RNA gene	Chr4:112741051-112743357 (+)
CAST/EiJ	MGP_CASTEiJ_G0014889	unclassified non-coding RNA gene	Chr4:120843693-120845954 (+)
CBA/J	MGP_CBAJ_G0015315	unclassified non-coding RNA gene	Chr4:132435596-132437758 (+)
DBA/2J	MGP_DBA2J_G0015409	unclassified non-coding RNA gene	Chr4:120015975-120018132 (+)
FVB/NJ	MGP_FVBNJ_G0015416	unclassified non-coding RNA gene	Chr4:118625951-118628088 (+)
LP/J	MGP_LPJ_G0015489	unclassified non-coding RNA gene	Chr4:124624956-124627147 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015439	unclassified non-coding RNA gene	Chr4:137391918-137394060 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016007	unclassified non-coding RNA gene	Chr4:123093088-123095259 (+)
PWK/PhJ	MGP_PWKPhJ_G0014674	unclassified non-coding RNA gene	Chr4:116404987-116407288 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014463	unclassified non-coding RNA gene	Chr4:118919805-118921954 (+)
WSB/EiJ	MGP_WSBEiJ_G0014994	unclassified non-coding RNA gene	Chr4:123190262-123192424 (+)

Homology

• Gene Tree
  4933421A08Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving 4933421A08Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000086443 (Evidence)
• NCBI Gene
  71097

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086443	Ensembl Gene Model | MGI Sequence Detail	2167	C57BL/6J
transcript	ENSMUST00000135313	Ensembl | MGI Sequence Detail	1638	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 6
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12

TSS for 4933421A08Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr38837	Chr4:122855067-122855142 (+)	3 bp