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Crnde Gene Detail
Summary
  • Symbol
    Crnde
  • Name
    colorectal neoplasia differentially expressed, non-protein coding
  • Synonyms
    4933436C20Rik
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1918546
    NCBI Gene: 71296
  • Alliance
    gene page
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:93052661-93082739 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 44.89 cM, cytoband C5
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    863 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918546
 lncRNA gene Chr8:93052659-93084247 (-)
129S1/SvImJ MGP_129S1SvImJ_G0007367
 lincRNA gene Chr8:93617351-93647296 (-)
A/J MGP_AJ_G0007364
 lincRNA gene Chr8:89928734-89959121 (-)
AKR/J MGP_AKRJ_G0007336
 lincRNA gene Chr8:92465900-92495861 (-)
BALB/cJ MGP_BALBcJ_G0007342
 lincRNA gene Chr8:90084167-90114137 (-)
C3H/HeJ MGP_C3HHeJ_G0007286
 lincRNA gene Chr8:93161671-93192253 (-)
C57BL/6NJ MGP_C57BL6NJ_G0007513
 lincRNA gene Chr8:97056481-97087579 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0006706
 lincRNA gene Chr8:83858058-83885929 (-)
CAST/EiJ MGP_CASTEiJ_G0007188
 lincRNA gene Chr8:92708240-92741473 (-)
CBA/J MGP_CBAJ_G0007268
 lincRNA gene Chr8:100292909-100326474 (-)
DBA/2J MGP_DBA2J_G0007291
 lincRNA gene Chr8:89476654-89506569 (-)
FVB/NJ MGP_FVBNJ_G0007312
 lincRNA gene Chr8:88406330-88436816 (-)
LP/J MGP_LPJ_G0007372
 lincRNA gene Chr8:93730191-93760142 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0007288
 lincRNA gene Chr8:102681872-102712305 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0007515
 lincRNA gene Chr8:92563777-92594129 (-)
PWK/PhJ MGP_PWKPhJ_G0007129
 lincRNA gene Chr8:88814688-88845200 (-)
SPRET/EiJ MGP_SPRETEiJ_G0007037
 lincRNA gene Chr8:91430033-91461518 (-)
WSB/EiJ MGP_WSBEiJ_G0007248
 lincRNA gene Chr8:93033087-93062900 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    4 phenotype references
Mice homozygous for a null allele are viable.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    714
  • Tissues
    8
  • cDNA Data
    9
  • Literature Summary
    3
Sequences &
Gene Models
less
  • All Sequences
    68
  • RefSeq
    2
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 71296 NCBI Gene Model | MGI Sequence Detail 30079 C57BL/6J ±  kb
transcript NR_033641 RefSeq | MGI Sequence Detail 1234 C57BL/6  
polypeptide Q9D3T5 UniProt | EBI | MGI Sequence Detail 106 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 9
    cDNA 9

    Microarray probesets 2
References
more
  • Summaries
    All 21
    Developmental Gene Expression 3
    Gene Ontology 1
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:344618 Yuan Y, et al., lncRNA CRNDE Affects Th17/IL-17A and Inhibits Epithelial-Mesenchymal Transition in Lung Epithelial Cells Reducing Asthma Signs. Oxid Med Cell Longev. 2023;2023:2092184
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory