5530400C23Rik Gene Detail

Summary

• Symbol
  5530400C23Rik
• Name
  RIKEN cDNA 5530400C23 gene

• Feature Type
  protein coding gene
• IDs
  MGI:1918650
  NCBI Gene: 232426
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:133269179-133272753 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 64.03 cM, cytoband F3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  204 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918650	protein coding gene	Chr6:133269179-133272755 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0031400	protein coding gene	Chr6:137772561-137776136 (+)
A/J	MGP_AJ_G0031376	protein coding gene	Chr6:132103768-132107343 (+)
AKR/J	MGP_AKRJ_G0031303	protein coding gene	Chr6:136221507-136225080 (+)
BALB/cJ	MGP_BALBcJ_G0031382	protein coding gene	Chr6:131659392-131662966 (+)
C3H/HeJ	MGP_C3HHeJ_G0031104	protein coding gene	Chr6:136384867-136388441 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0031842	protein coding gene	Chr6:141235273-141238853 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0028974	protein coding gene	Chr6:130838138-130841691 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0031063	protein coding gene	Chr6:146742210-146745791 (+)
DBA/2J	MGP_DBA2J_G0031221	protein coding gene	Chr6:131192266-131195842 (+)
FVB/NJ	MGP_FVBNJ_G0031171	protein coding gene	Chr6:130163111-130166686 (+)
LP/J	MGP_LPJ_G0031305	protein coding gene	Chr6:137643576-137647148 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0031211	protein coding gene	Chr6:150614595-150616949 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0030198	protein coding gene	Chr6:129573218-129575518 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0030022	protein coding gene	Chr6:134338172-134340479 (+)
WSB/EiJ	MGP_WSBEiJ_G0030564	protein coding gene	Chr6:136509999-136512351 (+)

Homology

• MGI Vertebrate Homology
  5530400C23Rik stringent orthology
  1 mouse;2 rat
  
• Gene Tree
  5530400C23Rik
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF , CvDC
• Find Mice (IMSR)
  10 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  1
• GO References
  1

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2
• UniProt
  1
• CCDS
  CCDS51935.1

• Ensembl
  ENSMUSG00000055594 (Evidence)
• NCBI Gene
  232426

Representative Sequences			Length	Strain/Species
genomic	232426	NCBI Gene Model | MGI Sequence Detail	3575	C57BL/6J
transcript	NM_027784	RefSeq | MGI Sequence Detail	647	C57BL/6
polypeptide	NP_082060	RefSeq | MGI Sequence Detail	173	C57BL/6

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR026086 Proline-rich protein

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 2

References

• Summaries
  All 14

  Gene Ontology 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:162220 Magdaleno S, et al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol. 2006 Apr;4(4):e86