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Ankrd40 Gene Detail
Summary
  • Symbol
    Ankrd40
  • Name
    ankyrin repeat domain 40
  • Synonyms
    1110011C06Rik, 5530600A18Rik, Gcap15
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918702
    NCBI Gene: 71452
  • Alliance
    gene page
  • Transcription Start Sites
    11 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:94218827-94232667 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 58.90 cM, cytoband C
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    285 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918702
 protein coding gene Chr11:94218827-94232673 (+)
129S1/SvImJ MGP_129S1SvImJ_G0018954
 protein coding gene Chr11:96401481-96416478 (+)
A/J MGP_AJ_G0018922
 protein coding gene Chr11:92556490-92570172 (+)
AKR/J MGP_AKRJ_G0018892
 protein coding gene Chr11:95434602-95448257 (+)
BALB/cJ MGP_BALBcJ_G0018895
 protein coding gene Chr11:92999483-93020039 (+)
C3H/HeJ MGP_C3HHeJ_G0018709
 protein coding gene Chr11:95518451-95533877 (+)
C57BL/6NJ MGP_C57BL6NJ_G0019347
 protein coding gene Chr11:99404041-99420149 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0016978
 protein coding gene Chr11:90053274-90068167 (+)
CAST/EiJ MGP_CASTEiJ_G0018264
 protein coding gene Chr11:96221186-96241042 (+)
CBA/J MGP_CBAJ_G0018680
 protein coding gene Chr11:103534120-103553787 (+)
DBA/2J MGP_DBA2J_G0018788
 protein coding gene Chr11:92132235-92147257 (+)
FVB/NJ MGP_FVBNJ_G0018777
 protein coding gene Chr11:91552150-91567354 (+)
LP/J MGP_LPJ_G0018858
 protein coding gene Chr11:96949902-96967246 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0018804
 protein coding gene Chr11:103571529-103585456 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0019387
 protein coding gene Chr11:95657794-95672793 (+)
PWK/PhJ MGP_PWKPhJ_G0018034
 protein coding gene Chr11:93060324-93074372 (+)
SPRET/EiJ MGP_SPRETEiJ_G0017824
 protein coding gene Chr11:95319024-95333831 (+)
WSB/EiJ MGP_WSBEiJ_G0018313
 protein coding gene Chr11:95535836-95550365 (+)



Homology
more
  • Human Ortholog
    ANKRD40, ankyrin repeat domain 40
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ANKRD40, ankyrin repeat domain 40
  • Links
    NCBI Gene ID: 91369
    neXtProt AC: NX_Q6AI12
    UniProt: Q6AI12

  • Chr Location
    17q21.33; chr17:50693198-50707914 (-)  GRCh38
Human Diseases
less
  • Mutations/Alleles
    2 with disease annotations
  • References
    2 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from multigenic genotypes
    14 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    730
  • Tissues
    15
  • cDNA Data
    12
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000020864 Ensembl Gene Model | MGI Sequence Detail 13841 C57BL/6J ±  kb
transcript ENSMUST00000107818 Ensembl | MGI Sequence Detail 3487 Not Applicable  
polypeptide ENSMUSP00000103448 Ensembl | MGI Sequence Detail 363 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000031105 ankyrin repeat domain-containing protein 40
    (term hierarchy)
  • InterPro Domains
    IPR002110 Ankyrin repeat
    IPR036770 Ankyrin repeat-containing domain superfamily
    IPR039195 Ankyrin repeat domain-containing protein 40
  • GlyGen
    Q5SUE8 3 sites, 1 N-linked glycan (1 site), 1 O-linked glycan (2 sites)
Molecular
Reagents
less
  • All nucleic 12
    cDNA 12

    Microarray probesets 4
Other
Accession IDs
less
MGD-MRK-18682, MGI:101858, MGI:1915744
References
more
  • Summaries
    All 36
    Developmental Gene Expression 2
    Diseases 2
    Phenotypes 14
  • Earliest
    J:19885 Kambouris M, et al., Novel cDNA clones obtained by antibody screening of a mouse cerebellar cDNA expression library. Brain Res Mol Brain Res. 1994 Sep;25(3-4):183-91
  • Latest
    J:295904 Mohan RA, et al., T-box transcription factor 3 governs a transcriptional program for the function of the mouse atrioventricular conduction system. Proc Natl Acad Sci U S A. 2020 Aug 4;117(31):18617-18626
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory