8430429K09Rik Gene Detail

Summary

• Symbol
  8430429K09Rik
• Name
  RIKEN cDNA 8430429K09 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918773
  NCBI Gene: 71523
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:3402437-3429831 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 2.42 cM, cytoband A1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  633 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918773	lncRNA gene	Chr11:3402365-3429831 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015147	unclassified non-coding RNA gene	Chr11:316055-352336 (+)
A/J	MGP_AJ_G0015121	unclassified non-coding RNA gene	Chr11:367388-397482 (+)
AKR/J	MGP_AKRJ_G0015084	unclassified non-coding RNA gene	Chr11:383768-415362 (+)
BALB/cJ	MGP_BALBcJ_G0015084	unclassified non-coding RNA gene	Chr11:338673-368946 (+)
C3H/HeJ	MGP_C3HHeJ_G0014907	unclassified non-coding RNA gene	Chr11:319673-348756 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015540	unclassified non-coding RNA gene	Chr11:379565-423409 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013286	unclassified non-coding RNA gene	Chr11:279619-285922 (+)
CAST/EiJ	MGP_CASTEiJ_G0014461	unclassified non-coding RNA gene	Chr11:272692-302616 (+)
CBA/J	MGP_CBAJ_G0014886	unclassified non-coding RNA gene	Chr11:557893-563838 (+)
DBA/2J	MGP_DBA2J_G0014979	unclassified non-coding RNA gene	Chr11:287693-316047 (+)
FVB/NJ	MGP_FVBNJ_G0014990	unclassified non-coding RNA gene	Chr11:318120-324048 (+)
LP/J	MGP_LPJ_G0015061	unclassified non-coding RNA gene	Chr11:415993-449880 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015017	unclassified non-coding RNA gene	Chr11:301545-335209 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015579	unclassified non-coding RNA gene	Chr11:390436-425403 (+)
PWK/PhJ	MGP_PWKPhJ_G0014253	unclassified non-coding RNA gene	Chr11:265767-290522 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014041	unclassified non-coding RNA gene	Chr11:347655-380200 (+)
WSB/EiJ	MGP_WSBEiJ_G0014564	unclassified non-coding RNA gene	Chr11:269293-302145 (+)

Homology

• Gene Tree
  8430429K09Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  7
• Gene trapped
  7
• Find Mice (IMSR)
  4 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  39
• RefSeq
  3
• UniProt
  1

• Ensembl
  ENSMUSG00000034587 (Evidence)
• NCBI Gene
  71523

Representative Sequences			Length	Strain/Species
genomic	71523	NCBI Gene Model | MGI Sequence Detail	27395	C57BL/6J
transcript	NR_045276	RefSeq | MGI Sequence Detail	1838	C57BL/6
polypeptide	Q8C347	UniProt | EBI | MGI Sequence Detail	114	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 8430429K09Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100052	Chr11:3402458-3402510 (+)	47 bp