9130019P16Rik Gene Detail

Summary

• Symbol
  9130019P16Rik
• Name
  RIKEN cDNA 9130019P16 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918824
  NCBI Gene: 100042056
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr6:54246666-54407206 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 26.84 cM, cytoband B3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  5423 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918824	lncRNA gene	Chr6:54246666-54407206 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015634	unclassified non-coding RNA gene	Chr6:53615233-53781973 (-)
A/J	MGP_AJ_G0015610	unclassified non-coding RNA gene	Chr6:51129666-51291548 (-)
AKR/J	MGP_AKRJ_G0015573	unclassified non-coding RNA gene	Chr6:52864056-53033243 (-)
BALB/cJ	MGP_BALBcJ_G0015572	unclassified non-coding RNA gene	Chr6:51480928-51643249 (-)
C3H/HeJ	MGP_C3HHeJ_G0015394	unclassified non-coding RNA gene	Chr6:52884238-53048716 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016025	unclassified non-coding RNA gene	Chr6:54805501-54982764 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013759	unclassified non-coding RNA gene	Chr6:48743112-48897518 (-)
CAST/EiJ	MGP_CASTEiJ_G0014950	unclassified non-coding RNA gene	Chr6:52727836-52895586 (-)
CBA/J	MGP_CBAJ_G0015375	unclassified non-coding RNA gene	Chr6:57060227-57242799 (-)
DBA/2J	MGP_DBA2J_G0015469	unclassified non-coding RNA gene	Chr6:51033709-51193288 (-)
FVB/NJ	MGP_FVBNJ_G0015476	unclassified non-coding RNA gene	Chr6:50621715-50778362 (-)
LP/J	MGP_LPJ_G0015550	unclassified non-coding RNA gene	Chr6:53559901-53730015 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015499	unclassified non-coding RNA gene	Chr6:59603120-59774221 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016067	unclassified non-coding RNA gene	Chr6:52818658-52980384 (-)
PWK/PhJ	MGP_PWKPhJ_G0014734	unclassified non-coding RNA gene	Chr6:50681120-50844328 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014523	unclassified non-coding RNA gene	Chr6:52191547-52355002 (-)
WSB/EiJ	MGP_WSBEiJ_G0015054	unclassified non-coding RNA gene	Chr6:52839284-53009013 (-)

Homology

• Gene Tree
  9130019P16Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  2
• UniProt
  2

• Ensembl
  ENSMUSG00000073067 (Evidence)
• NCBI Gene
  100042056

Representative Sequences			Length	Strain/Species
genomic	100042056	NCBI Gene Model | MGI Sequence Detail	160541	C57BL/6J
transcript	NR_033635	RefSeq | MGI Sequence Detail	4486	C57BL/6
polypeptide	Q8CCR9	UniProt | EBI | MGI Sequence Detail	105	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:3782966

References

• Summaries
  All 15
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 9130019P16Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr61075	Chr6:54386301-54386328 (-)	20,891 bp
Tssr61074	Chr6:54314221-54314227 (-)	92,982 bp
Tssr61073	Chr6:54269727-54269729 (-)	137,478 bp
Tssr61072	Chr6:54256054-54256067 (-)	151,145 bp