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Tmem238l Gene Detail
Summary
  • Symbol
    Tmem238l
  • Name
    transmembrane protein 238 like
  • Synonyms
    9130409J20Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918826
    NCBI Gene: 71576
  • Alliance
    gene page
  • Transcription Start Sites
    12 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:66847464-66855842 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 40.59 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    324 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918826
 protein coding gene Chr11:66847368-66855842 (+)
129S1/SvImJ MGP_129S1SvImJ_G0005245
 lincRNA gene Chr11:67229873-67239313 (+)
A/J MGP_AJ_G0005230
 lincRNA gene Chr11:64705672-64714035 (+)
AKR/J MGP_AKRJ_G0005208
 lincRNA gene Chr11:66651549-66659912 (+)
BALB/cJ MGP_BALBcJ_G0005210
 lincRNA gene Chr11:64995171-65004018 (+)
C3H/HeJ MGP_C3HHeJ_G0005159
 lincRNA gene Chr11:66655910-66664232 (+)
C57BL/6NJ MGP_C57BL6NJ_G0005362
 lincRNA gene Chr11:69249391-69257750 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0004756
 lincRNA gene Chr11:61675525-61683725 (+)
CAST/EiJ MGP_CASTEiJ_G0005106
 lincRNA gene Chr11:66876297-66885873 (+)
CBA/J MGP_CBAJ_G0005149
 lincRNA gene Chr11:72298342-72311243 (+)
DBA/2J MGP_DBA2J_G0005166
 lincRNA gene Chr11:64256307-64265024 (+)
FVB/NJ MGP_FVBNJ_G0005191
 lincRNA gene Chr11:63918835-63927591 (+)
LP/J MGP_LPJ_G0005247
 lincRNA gene Chr11:67774765-67784463 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0005174
 lincRNA gene Chr11:73135677-73144032 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0005365
 lincRNA gene Chr11:66872879-66881242 (+)
PWK/PhJ MGP_PWKPhJ_G0005055
 lincRNA gene Chr11:64899084-64907515 (+)
SPRET/EiJ MGP_SPRETEiJ_G0004977
 lincRNA gene Chr11:66710009-66718152 (+)
WSB/EiJ MGP_WSBEiJ_G0005154
 lincRNA gene Chr11:66493160-66502808 (+)



Homology
more
  • Human Ortholog
    TMEM238L, transmembrane protein 238 like
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TMEM238L, transmembrane protein 238 like
  • Synonyms
    FORCP, LINC00675
  • Links
    NCBI Gene ID: 100289255
    UniProt: A6NJY4

  • Chr Location
    chr17:10794908-10804099 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    1
  • Genomic Mutations
    1 involving Tmem238l
  • Find Mice (IMSR)
    1 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    722
  • Tissues
    16
  • cDNA Data
    3
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    34
  • RefSeq
    5
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000085683 Ensembl Gene Model | MGI Sequence Detail 8379 C57BL/6J ±  kb
transcript ENSMUST00000211300 Ensembl | MGI Sequence Detail 930 Not Applicable  
polypeptide ENSMUSP00000147820 Ensembl | MGI Sequence Detail 79 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR029365 TMEM238 protein
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 1
Other
Accession IDs
less
MGI:5906672
References
more
  • Summaries
    All 17
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 4
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory