4930447N08Rik Gene Detail

Summary

• Symbol
  4930447N08Rik
• Name
  RIKEN cDNA 4930447N08 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918897
  NCBI Gene: 71647
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr3:122588740-122595629 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  382 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918897	lncRNA gene	Chr3:122555604-122595697 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015523	unclassified non-coding RNA gene	Chr3:125044956-125088781 (-)
A/J	MGP_AJ_G0015500	unclassified non-coding RNA gene	Chr3:120859195-120900922 (-)
AKR/J	MGP_AKRJ_G0015464	unclassified non-coding RNA gene	Chr3:123940413-123980600 (-)
BALB/cJ	MGP_BALBcJ_G0015462	unclassified non-coding RNA gene	Chr3:120671331-120712457 (-)
C3H/HeJ	MGP_C3HHeJ_G0015285	unclassified non-coding RNA gene	Chr3:124335230-124377449 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015916	unclassified non-coding RNA gene	Chr3:129576340-129619688 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013651	unclassified non-coding RNA gene	Chr3:116291897-116332949 (-)
CAST/EiJ	MGP_CASTEiJ_G0014839	unclassified non-coding RNA gene	Chr3:123733636-123774967 (-)
CBA/J	MGP_CBAJ_G0015266	unclassified non-coding RNA gene	Chr3:133962193-134006387 (-)
DBA/2J	MGP_DBA2J_G0015360	unclassified non-coding RNA gene	Chr3:119989002-120030410 (-)
FVB/NJ	MGP_FVBNJ_G0015367	unclassified non-coding RNA gene	Chr3:117604148-117644241 (-)
LP/J	MGP_LPJ_G0015439	unclassified non-coding RNA gene	Chr3:126558812-126604526 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015391	unclassified non-coding RNA gene	Chr3:141515286-141559843 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015957	unclassified non-coding RNA gene	Chr3:123496808-123541481 (-)
PWK/PhJ	MGP_PWKPhJ_G0014625	unclassified non-coding RNA gene	Chr3:119710825-119752528 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014413	unclassified non-coding RNA gene	Chr3:121605439-121645475 (-)
WSB/EiJ	MGP_WSBEiJ_G0014945	unclassified non-coding RNA gene	Chr3:124231481-124276727 (-)

Homology

• Gene Tree
  4930447N08Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 4930447N08Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000106583 (Evidence)
• NCBI Gene
  71647

Representative Sequences			Length	Strain/Species
genomic	71647	NCBI Gene Model | MGI Sequence Detail	6890	C57BL/6J
transcript	NR_045168	RefSeq | MGI Sequence Detail	1156	ZRU/MplStud

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Diseases 1

  Phenotypes 4
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for 4930447N08Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr35468	Chr3:122595668-122595694 (-)	-52 bp
Tssr35467	Chr3:122595661-122595667 (-)	-35 bp
Tssr35466	Chr3:122595642-122595657 (-)	-21 bp
Tssr35465	Chr3:122595634-122595641 (-)	-9 bp