Adh6-ps1 Pseudogene Detail

Summary

• Symbol
  Adh6-ps1
• Name
  alcohol dehydrogenase 6 (class V), pseudogene 1
• Synonyms
  1300002P07Rik, Adh5ps

• Feature Type
  pseudogene
• IDs
  MGI:1918999
  NCBI Gene: 639769
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:138079882-138094052 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 64.22 cM, cytoband H2
• Mapping Data
  4 experiments

Strain
Comparison

• SNPs within 2kb
  727 from dbSNP Build 142
• Strain Annotations
  5

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918999	pseudogene	Chr3:138079882-138100763 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0040364	pseudogene	Chr3:146301925-146319977 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036971	pseudogene	Chr3:131833102-131854076 (+)
CAST/EiJ	MGP_CASTEiJ_G0038562	pseudogene	Chr3:140154689-140163949 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0037986	pseudogene	Chr3:137695650-137714311 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Adh6-ps1
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Adh6-ps1
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  12
• RefSeq
  1

• Ensembl
  ENSMUSG00000090306 (Evidence)
• NCBI Gene
  639769

Representative Sequences			Length	Strain/Species
genomic	639769	NCBI Gene Model | MGI Sequence Detail	14171	C57BL/6J
transcript	NR_033581	RefSeq | MGI Sequence Detail	2789	C57BL/6

Molecular
Reagents

• All nucleic 2

  Genomic 1

  cDNA 1

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:3779711

References

• Summaries
  All 16

  Diseases 1

  Phenotypes 4
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Adh6-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31980	Chr3:138079907-138079924 (+)	34 bp