2610017A05Rik Gene Detail

Summary

• Symbol
  2610017A05Rik
• Name
  RIKEN cDNA 2610017A05 gene
• Synonyms
  Gm44143

• Feature Type
  lncRNA gene
• IDs
  MGI:1919056
  NCBI Gene: 105242826
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:148733030-148734612 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  80 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1919056	lncRNA gene	Chr6:148732950-148734612 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002123	unclassified gene	Chr6:153934045-153935705 (+)
A/J	MGP_AJ_G0002098	unclassified gene	Chr6:147821485-147823145 (+)
AKR/J	MGP_AKRJ_G0002085	unclassified gene	Chr6:152225467-152227127 (+)
BALB/cJ	MGP_BALBcJ_G0002095	unclassified gene	Chr6:147587995-147589654 (+)
C3H/HeJ	MGP_C3HHeJ_G0002071	unclassified gene	Chr6:152279450-152281112 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002219	unclassified gene	Chr6:158025293-158026953 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001844	unclassified gene	Chr6:146541830-146543509 (+)
CAST/EiJ	MGP_CASTEiJ_G0002038	unclassified gene	Chr6:151957500-151959129 (+)
CBA/J	MGP_CBAJ_G0002065	unclassified gene	Chr6:164100772-164102432 (+)
DBA/2J	MGP_DBA2J_G0002070	unclassified gene	Chr6:146617145-146618807 (+)
FVB/NJ	MGP_FVBNJ_G0002079	unclassified gene	Chr6:145311812-145313472 (+)
LP/J	MGP_LPJ_G0002123	unclassified gene	Chr6:154067400-154069058 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002054	unclassified gene	Chr6:167731208-167732868 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002208	unclassified gene	Chr6:152085985-152087645 (+)
PWK/PhJ	MGP_PWKPhJ_G0001999	unclassified gene	Chr6:145134581-145136228 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0001960	unclassified gene	Chr6:150187799-150189443 (+)
WSB/EiJ	MGP_WSBEiJ_G0002063	unclassified gene	Chr6:152701794-152703454 (+)

Homology

• Gene Tree
  2610017A05Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000107909 (Evidence)
• NCBI Gene
  105242826

Representative Sequences			Length	Strain/Species
genomic	105242826	NCBI Gene Model | MGI Sequence Detail	1583	C57BL/6J
transcript	NR_175862	RefSeq | MGI Sequence Detail	427	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5690535

References

• Summaries
  All 7
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 2610017A05Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr59636	Chr6:148733024-148733035 (+)	0 bp
Tssr59637	Chr6:148733042-148733056 (+)	19 bp