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1600020E01Rik Gene Detail
Summary
  • Symbol
    1600020E01Rik
  • Name
    RIKEN cDNA 1600020E01 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1919262
    NCBI Gene: 72012
  • Alliance
    gene page
  • Transcription Start Sites
    9 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:86504312-86541431 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 37.72 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    785 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919262
 lncRNA gene Chr6:86503229-86559448 (+)
129S1/SvImJ MGP_129S1SvImJ_G0004308
 antisense lncRNA gene Chr6:87817793-87882827 (+)
A/J MGP_AJ_G0004286
 antisense lncRNA gene Chr6:84430648-84487109 (+)
AKR/J MGP_AKRJ_G0004268
 antisense lncRNA gene Chr6:86876441-86934604 (+)
BALB/cJ MGP_BALBcJ_G0004272
 antisense lncRNA gene Chr6:84442768-84499709 (+)
C3H/HeJ MGP_C3HHeJ_G0004233
 antisense lncRNA gene Chr6:97534987-97590729 (-)
C57BL/6NJ MGP_C57BL6NJ_G0004421
 antisense lncRNA gene Chr6:90204115-90264420 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0003892
 antisense lncRNA gene Chr6:82605501-82668546 (+)
CAST/EiJ MGP_CASTEiJ_G0004182
 antisense lncRNA gene Chr6:86946127-87001217 (+)
CBA/J MGP_CBAJ_G0004214
 antisense lncRNA gene Chr6:93752889-93812807 (+)
DBA/2J MGP_DBA2J_G0004230
 antisense lncRNA gene Chr6:83746290-83803705 (+)
FVB/NJ MGP_FVBNJ_G0004246
 antisense lncRNA gene Chr6:82931184-82987501 (+)
LP/J MGP_LPJ_G0004309
 antisense lncRNA gene Chr6:87857174-87916114 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0004237
 antisense lncRNA gene Chr6:97869626-97930391 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0004419
 antisense lncRNA gene Chr6:86715796-86773077 (+)
PWK/PhJ MGP_PWKPhJ_G0004135
 antisense lncRNA gene Chr6:82690406-82746968 (+)
SPRET/EiJ MGP_SPRETEiJ_G0004078
 antisense lncRNA gene Chr6:85555746-85613168 (+)
WSB/EiJ MGP_WSBEiJ_G0004219
 antisense lncRNA gene Chr6:87173241-87236444 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    14 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    29
Sequences &
Gene Models
less
  • All Sequences
    42
  • RefSeq
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 72012 NCBI Gene Model | MGI Sequence Detail 37120 C57BL/6J ±  kb
transcript NR_037961 RefSeq | MGI Sequence Detail 610 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 29
    cDNA 29

    Microarray probesets 2
References
more
  • Summaries
    All 26
    Phenotypes 14
  • Earliest
    J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
  • Latest
    J:330636 Iwata S, et al., An efficient i-GONAD method for creating and maintaining lethal mutant mice using an inversion balancer identified from the C3H/HeJJcl strain. G3 (Bethesda). 2021;11(8)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory