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Phf10 Gene Detail
Summary
  • Symbol
    Phf10
  • Name
    PHD finger protein 10
  • Synonyms
    1810055P05Rik, Baf45a
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919307
    NCBI Gene: 72057
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:15165271-15181535 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 8.95 cM, cytoband A2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    420 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919307
 protein coding gene Chr17:15165269-15181550 (-)
129S1/SvImJ MGP_129S1SvImJ_G0023168
 protein coding gene Chr17:12774606-12790858 (-)
A/J MGP_AJ_G0023134
 protein coding gene Chr17:12591298-12608613 (-)
AKR/J MGP_AKRJ_G0023104
 protein coding gene Chr17:12498686-12516422 (-)
BALB/cJ MGP_BALBcJ_G0023136
 protein coding gene Chr17:12420455-12436663 (-)
C3H/HeJ MGP_C3HHeJ_G0022897
 protein coding gene Chr17:12678715-12694282 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023577
 protein coding gene Chr17:13356715-13371233 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0021089
 protein coding gene Chr17:10612335-10628986 (-)
CAST/EiJ MGP_CASTEiJ_G0022412
 protein coding gene Chr17:12621734-12637972 (-)
CBA/J MGP_CBAJ_G0022871
 protein coding gene Chr17:13770166-13786560 (-)
DBA/2J MGP_DBA2J_G0023006
 protein coding gene Chr17:12311302-12327510 (-)
FVB/NJ MGP_FVBNJ_G0022972
 protein coding gene Chr17:12096886-12113207 (-)
LP/J MGP_LPJ_G0023078
 protein coding gene Chr17:12747021-12763273 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022993
 protein coding gene Chr17:13361360-13378865 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023613
 protein coding gene Chr17:12727513-12801636 (-)
PWK/PhJ MGP_PWKPhJ_G0022160
 protein coding gene Chr17:11730402-11749605 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021990
 protein coding gene Chr17:11707239-11725550 (-)
WSB/EiJ MGP_WSBEiJ_G0022473
 protein coding gene Chr17:13042524-13061294 (-)



Homology
more
  • Human Ortholog
    PHF10, PHD finger protein 10
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PHF10, PHD finger protein 10
  • Synonyms
    BAF45A, SMARCG4, XAP135
  • Links
    NCBI Gene ID: 55274
    neXtProt AC: NX_Q8WUB8
    UniProt: Q8WUB8

  • Chr Location
    6q27; chr6:169703902-169725566 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 2 alleles in 2 genetic backgrounds
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a floxed allele are viable and fertile.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
    31
  • GO References
    20
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    777
  • Tissues
    67
  • cDNA Data
    12
  • Literature Summary
    13
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000023883 Ensembl Gene Model | MGI Sequence Detail 16265 C57BL/6J ±  kb
transcript ENSMUST00000024657 Ensembl | MGI Sequence Detail 1663 Not Applicable  
polypeptide ENSMUSP00000024657 Ensembl | MGI Sequence Detail 497 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 15
    cDNA 12
    Primer pair 3

    Microarray probesets 5
Other
Accession IDs
less
MGI:2147013
References
more
  • Summaries
    All 63
    Developmental Gene Expression 13
    Gene Ontology 20
    Phenotypes 10
  • Earliest
    J:320308 Valka I, et al., Separation and Quantification of Some Alkaloids from Fumaria parviflora by Capillary Isotachophoresis1. Planta Med. 1985 Aug;51(4):319-22
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory