1700016L21Rik Gene Detail

Summary

• Symbol
  1700016L21Rik
• Name
  RIKEN cDNA 1700016L21 gene
• Synonyms
  DCKO, Jr3

• Feature Type
  lncRNA gene
• IDs
  MGI:1919458
  NCBI Gene: 72208
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr1:80423649-80453377 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  970 from dbSNP Build 142
• Strain Annotations
  18
• PCR
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1919458	lncRNA gene	Chr1:80405912-80457752 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004889	lincRNA gene	Chr1:81266069-81302132 (+)
A/J	MGP_AJ_G0004871	lincRNA gene	Chr1:78401365-78436907 (+)
AKR/J	MGP_AKRJ_G0004849	lincRNA gene	Chr1:80547371-80581348 (+)
BALB/cJ	MGP_BALBcJ_G0004852	lincRNA gene	Chr1:78480592-78515346 (+)
C3H/HeJ	MGP_C3HHeJ_G0004801	lincRNA gene	Chr1:80894501-80928319 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005003	lincRNA gene	Chr1:84425969-84463190 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004428	lincRNA gene	Chr1:73709069-73745621 (+)
CAST/EiJ	MGP_CASTEiJ_G0004753	lincRNA gene	Chr1:80269708-80307827 (+)
CBA/J	MGP_CBAJ_G0004794	lincRNA gene	Chr1:87124027-87161117 (+)
DBA/2J	MGP_DBA2J_G0004812	lincRNA gene	Chr1:77701306-77736279 (+)
FVB/NJ	MGP_FVBNJ_G0004831	lincRNA gene	Chr1:76838235-76873291 (+)
LP/J	MGP_LPJ_G0004890	lincRNA gene	Chr1:82416905-82454098 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004816	lincRNA gene	Chr1:90409569-90445262 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005007	lincRNA gene	Chr1:80680627-80729533 (+)
PWK/PhJ	MGP_PWKPhJ_G0004705	lincRNA gene	Chr1:77127213-77162103 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004631	lincRNA gene	Chr1:79932752-79972794 (+)
WSB/EiJ	MGP_WSBEiJ_G0004798	lincRNA gene	Chr1:80436639-80473757 (+)

Homology

• Gene Tree
  1700016L21Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  49 phenotypes from multigenic genotypes
  376 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Transgenic
  1
• Genomic Mutations
  2 involving 1700016L21Rik
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1

• Ensembl
  ENSMUSG00000101483 (Evidence)
• NCBI Gene
  72208

Representative Sequences			Length	Strain/Species
genomic	72208	NCBI Gene Model | MGI Sequence Detail	29729	C57BL/6J
transcript	NR_040460	RefSeq | MGI Sequence Detail	394	ZRU/MplStud

Molecular
Reagents

• All nucleic 3

  cDNA 2

  Primer pair 1

Other
Accession IDs

MGI:3057164

References

• Summaries
  All 384

  Phenotypes 376
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:355012 Kieler M, et al., Itaconate is a metabolic regulator of bone formation in homeostasis and arthritis. Ann Rheum Dis. 2024 Jul 10;

TSS for 1700016L21Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7594	Chr1:80423605-80423612 (+)	-40 bp
Tssr7595	Chr1:80423631-80423639 (+)	-14 bp
Tssr7596	Chr1:80423640-80423653 (+)	-2 bp