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Cimip1 Gene Detail
Summary
  • Symbol
    Cimip1
  • Name
    ciliary microtubule inner protein 1
  • Synonyms
    1700021F07Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919471
    NCBI Gene: 72221
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:173364385-173370295 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 96.88 cM, cytoband H3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    316 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919471
 protein coding gene Chr2:173364379-173370295 (+)
129S1/SvImJ MGP_129S1SvImJ_G0026957
 protein coding gene Chr2:179816369-179823378 (+)
A/J MGP_AJ_G0026924
 protein coding gene Chr2:172245570-172252120 (+)
AKR/J MGP_AKRJ_G0026895
 protein coding gene Chr2:177438187-177443966 (+)
BALB/cJ MGP_BALBcJ_G0026933
 protein coding gene Chr2:172648440-172654939 (+)
C3H/HeJ MGP_C3HHeJ_G0026675
 protein coding gene Chr2:177825765-177832561 (+)
C57BL/6NJ MGP_C57BL6NJ_G0027380
 protein coding gene Chr2:184977260-184983001 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024750
 protein coding gene Chr2:165475630-165481463 (+)
CAST/EiJ MGP_CASTEiJ_G0026133
 protein coding gene Chr2:178536820-178544458 (+)
CBA/J MGP_CBAJ_G0026652
 protein coding gene Chr2:191900372-191907574 (+)
DBA/2J MGP_DBA2J_G0026790
 protein coding gene Chr2:171337089-171342962 (+)
FVB/NJ MGP_FVBNJ_G0026756
 protein coding gene Chr2:169969804-169975563 (+)
LP/J MGP_LPJ_G0026891
 protein coding gene Chr2:179737764-179744934 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026775
 protein coding gene Chr2:194826746-194833074 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0027437
 protein coding gene Chr2:177458001-177463863 (+)
PWK/PhJ MGP_PWKPhJ_G0025870
 protein coding gene Chr2:171144855-171152048 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025670
 protein coding gene Chr2:176484258-176490189 (+)
WSB/EiJ MGP_WSBEiJ_G0026206
 protein coding gene Chr2:178411267-178418252 (+)



Homology
more
  • Human Ortholog
    CIMIP1, ciliary microtubule inner protein 1
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CIMIP1, ciliary microtubule inner protein 1
  • Synonyms
    bA196N14.1, C20orf85, LLC1
  • Links
    NCBI Gene ID: 128602
    neXtProt AC: NX_Q9H1P6
    UniProt: Q9H1P6

  • Chr Location
    20q13.32; chr20:58150902-58161150 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    5 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    732
  • Tissues
    3
  • cDNA Data
    18
  • Literature Summary
    1
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 72221 NCBI Gene Model | MGI Sequence Detail 5911 C57BL/6J ±  kb
transcript NM_028158 RefSeq | MGI Sequence Detail 641 Not Specified  
polypeptide Q9DA42 UniProt | EBI | MGI Sequence Detail 136 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 19
    cDNA 18
    Primer pair 1

    Microarray probesets 2
Other
Accession IDs
less
MGI:7470734
References
more
  • Summaries
    All 24
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory