1700030C12Rik Gene Detail

Summary

• Symbol
  1700030C12Rik
• Name
  RIKEN cDNA 1700030C12 gene
• Synonyms
  ENSMUSG00000073112

• Feature Type
  lncRNA gene
• IDs
  MGI:1919496
  NCBI Gene: 72246
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr11:23447761-23449663 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 14.32 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1919496	lncRNA gene	Chr11:23447753-23449663 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015160	unclassified non-coding RNA gene	Chr11:21256772-21259402 (+)
A/J	MGP_AJ_G0015134	unclassified non-coding RNA gene	Chr11:20428967-20430912 (+)
AKR/J	MGP_AKRJ_G0015097	unclassified non-coding RNA gene	Chr11:21155333-21157241 (+)
BALB/cJ	MGP_BALBcJ_G0015097	unclassified non-coding RNA gene	Chr11:20567030-20568943 (+)
C3H/HeJ	MGP_C3HHeJ_G0014920	unclassified non-coding RNA gene	Chr11:21038581-21041424 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015553	unclassified non-coding RNA gene	Chr11:22115691-22117408 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013299	unclassified non-coding RNA gene	Chr11:19323477-19325565 (+)
CAST/EiJ	MGP_CASTEiJ_G0014474	unclassified non-coding RNA gene	Chr11:21071147-21072934 (+)
CBA/J	MGP_CBAJ_G0014899	unclassified non-coding RNA gene	Chr11:23100414-23102322 (+)
DBA/2J	MGP_DBA2J_G0014992	unclassified non-coding RNA gene	Chr11:20355065-20357110 (+)
FVB/NJ	MGP_FVBNJ_G0015004	unclassified non-coding RNA gene	Chr11:20133404-20135312 (+)
LP/J	MGP_LPJ_G0015074	unclassified non-coding RNA gene	Chr11:21354534-21356469 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015030	unclassified non-coding RNA gene	Chr11:23627465-23630937 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015592	unclassified non-coding RNA gene	Chr11:21271044-21272987 (+)
PWK/PhJ	MGP_PWKPhJ_G0014266	unclassified non-coding RNA gene	Chr11:20401181-20403295 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014053	unclassified non-coding RNA gene	Chr11:21021920-21023831 (+)
WSB/EiJ	MGP_WSBEiJ_G0014577	unclassified non-coding RNA gene	Chr11:20906986-20910341 (+)

Homology

• Gene Tree
  1700030C12Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving 1700030C12Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000086459 (Evidence)
• NCBI Gene
  72246

Representative Sequences			Length	Strain/Species
genomic	72246	NCBI Gene Model | MGI Sequence Detail	1903	C57BL/6J
transcript	NR_166705	RefSeq | MGI Sequence Detail	1353	C57BL/6
polypeptide	Q3V134	UniProt | EBI | MGI Sequence Detail	127	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:3708546

References

• Summaries
  All 15

  Phenotypes 4
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700030C12Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100626	Chr11:23447735-23447740 (+)	-23 bp
Tssr100627	Chr11:23447745-23447789 (+)	6 bp
Tssr100628	Chr11:23447796-23447807 (+)	41 bp
Tssr100629	Chr11:23447810-23447832 (+)	60 bp
Tssr100630	Chr11:23447839-23447850 (+)	84 bp