2500004C02Rik Gene Detail

Summary

• Symbol
  2500004C02Rik
• Name
  RIKEN cDNA 2500004C02 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1919576
  NCBI Gene: 72326
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr2:153183077-153187730 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 75.41 cM, cytoband H2
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  144 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1919576	lncRNA gene	Chr2:153183077-153188033 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015479	unclassified non-coding RNA gene	Chr2:157971862-157979667 (-)
A/J	MGP_AJ_G0015456	unclassified non-coding RNA gene	Chr2:151652570-151657490 (-)
AKR/J	MGP_AKRJ_G0015420	unclassified non-coding RNA gene	Chr2:156085565-156090481 (-)
BALB/cJ	MGP_BALBcJ_G0015419	unclassified non-coding RNA gene	Chr2:151957601-151962835 (-)
C3H/HeJ	MGP_C3HHeJ_G0015242	unclassified non-coding RNA gene	Chr2:156465519-156470429 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015873	unclassified non-coding RNA gene	Chr2:162563154-162568063 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013611	unclassified non-coding RNA gene	Chr2:145222094-145227351 (-)
CAST/EiJ	MGP_CASTEiJ_G0014794	unclassified non-coding RNA gene	Chr2:156715601-156720508 (-)
CBA/J	MGP_CBAJ_G0015223	unclassified non-coding RNA gene	Chr2:168564692-168569708 (-)
DBA/2J	MGP_DBA2J_G0015317	unclassified non-coding RNA gene	Chr2:150862040-150866960 (-)
FVB/NJ	MGP_FVBNJ_G0015324	unclassified non-coding RNA gene	Chr2:149326284-149331201 (-)
LP/J	MGP_LPJ_G0015395	unclassified non-coding RNA gene	Chr2:158126628-158131681 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015348	unclassified non-coding RNA gene	Chr2:172578327-172583335 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015913	unclassified non-coding RNA gene	Chr2:155988559-155994242 (-)
PWK/PhJ	MGP_PWKPhJ_G0014582	unclassified non-coding RNA gene	Chr2:150395919-150401131 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014370	unclassified non-coding RNA gene	Chr2:154809373-154816181 (-)
WSB/EiJ	MGP_WSBEiJ_G0014901	unclassified non-coding RNA gene	Chr2:156876871-156881450 (-)

Homology

• Gene Tree
  2500004C02Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  37
• Gene trapped
  37
• Find Mice (IMSR)
  7 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  8

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000073236 (Evidence)
• NCBI Gene
  72326

Representative Sequences			Length	Strain/Species
genomic	72326	NCBI Gene Model | MGI Sequence Detail	4654	C57BL/6J
transcript	NR_040318	RefSeq | MGI Sequence Detail	1898	C57BL/6

Molecular
Reagents

• All nucleic 8

  cDNA 8

  
  

  Microarray probesets 2

References

• Summaries
  All 17

  Phenotypes 4
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 2500004C02Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr26902	Chr2:153188305-153188340 (-)	-593 bp
Tssr26901	Chr2:153187992-153188036 (-)	-284 bp
Tssr26900	Chr2:153187711-153187714 (-)	17 bp