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Rbm12b1 Gene Detail
Summary
  • Symbol
    Rbm12b1
  • Name
    RNA binding motif protein 12 B1
  • Synonyms
    3000004N20Rik, Rbm12b
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919647
    NCBI Gene: 72397
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:12140264-12146731 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 5.58 cM, cytoband A2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    195 from dbSNP Build 142
  • Strain Annotations
    15
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919647
 protein coding gene Chr4:12138957-12148922 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028061
 protein coding gene Chr4:8791668-8799354 (+)
A/J MGP_AJ_G0028018
 protein coding gene Chr4:8645062-8657839 (+)
AKR/J MGP_AKRJ_G0027984
 protein coding gene Chr4:8815150-8835430 (+)
BALB/cJ MGP_BALBcJ_G0028030
 protein coding gene Chr4:8565534-8573472 (+)
C3H/HeJ MGP_C3HHeJ_G0027761
 protein coding gene Chr4:9002623-9014228 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028474
 protein coding gene Chr4:9199889-9265815 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0027215
 protein coding gene Chr4:8810423-8820988 (+)
CBA/J no annotation
DBA/2J MGP_DBA2J_G0027876
 protein coding gene Chr4:8500910-8510014 (+)
FVB/NJ MGP_FVBNJ_G0027842
 protein coding gene Chr4:8340985-8347911 (+)
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0027875
 protein coding gene Chr4:9644067-9658051 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028533
 protein coding gene Chr4:8748379-8756156 (+)
PWK/PhJ MGP_PWKPhJ_G0026935
 protein coding gene Chr4:8526693-8619369 (+)
SPRET/EiJ MGP_SPRETEiJ_G0026766
 protein coding gene Chr4:8677180-8683573 (+)
WSB/EiJ MGP_WSBEiJ_G0027294
 protein coding gene Chr4:8874752-8881328 (+)



Homology
more
  • Human Ortholog
    RBM12B, RNA binding motif protein 12B
  • Vertebrate Orthologs
    5
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RBM12B, RNA binding motif protein 12B
  • Synonyms
    MGC:33837
  • Links
    NCBI Gene ID: 389677
    neXtProt AC: NX_Q8IXT5
    UniProt: Q8IXT5

  • Chr Location
    8q22.1; chr8:93728155-93741017 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    739
  • Tissues
    23
  • cDNA Data
    8
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000046667 Ensembl Gene Model | MGI Sequence Detail 6468 C57BL/6J ±  kb
transcript ENSMUST00000050069 Ensembl | MGI Sequence Detail 2949 Not Applicable  
polypeptide ENSMUSP00000053555 Ensembl | MGI Sequence Detail 836 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 9
    cDNA 8
    Primer pair 1

    Microarray probesets 4
References
more
  • Summaries
    All 21
    Developmental Gene Expression 2
    Gene Ontology 2
    Phenotypes 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory