2610206C17Rik Gene Detail

Summary

• Symbol
  2610206C17Rik
• Name
  RIKEN cDNA 2610206C17 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1919745
  NCBI Gene: 72495
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:84338848-84425757 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 48.36 cM, cytoband D3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  2335 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1919745	lncRNA gene	Chr7:84338848-84428261 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015679	unclassified non-coding RNA gene	Chr7:86869106-86949498 (+)
A/J	MGP_AJ_G0015658	unclassified non-coding RNA gene	Chr7:84791455-84870854 (+)
AKR/J	MGP_AKRJ_G0015621	unclassified non-coding RNA gene	Chr7:86751079-86834509 (+)
BALB/cJ	MGP_BALBcJ_G0015619	unclassified non-coding RNA gene	Chr7:84456773-84538555 (+)
C3H/HeJ	MGP_C3HHeJ_G0015441	unclassified non-coding RNA gene	Chr7:87285152-87366905 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016073	unclassified non-coding RNA gene	Chr7:90214069-90306854 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013803	unclassified non-coding RNA gene	Chr7:87111563-87189491 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0015422	unclassified non-coding RNA gene	Chr7:93244635-93339885 (+)
DBA/2J	MGP_DBA2J_G0015517	unclassified non-coding RNA gene	Chr7:83278199-83355731 (+)
FVB/NJ	MGP_FVBNJ_G0015524	unclassified non-coding RNA gene	Chr7:83225779-83316515 (+)
LP/J	MGP_LPJ_G0015597	unclassified non-coding RNA gene	Chr7:88136875-88213633 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015546	unclassified non-coding RNA gene	Chr7:93283334-93381576 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016115	unclassified non-coding RNA gene	Chr7:86117194-86200988 (+)
PWK/PhJ	MGP_PWKPhJ_G0014778	unclassified non-coding RNA gene	Chr7:76532941-76617901 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014567	unclassified non-coding RNA gene	Chr7:73108194-73179478 (+)
WSB/EiJ	MGP_WSBEiJ_G0015101	unclassified non-coding RNA gene	Chr7:86493490-86585947 (+)

Homology

• Gene Tree
  2610206C17Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  18 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving 2610206C17Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000085236 (Evidence)
• NCBI Gene
  72495

Representative Sequences			Length	Strain/Species
genomic	72495	NCBI Gene Model | MGI Sequence Detail	86910	C57BL/6J
transcript	NR_038175	RefSeq | MGI Sequence Detail	1717	C57BL/6
polypeptide	Q9D018	UniProt | EBI | MGI Sequence Detail	105	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 3

References

• Summaries
  All 33

  Phenotypes 18
• Earliest
  J:141526 Russell LB, et al., Analysis of the albino-locus region of the mouse. III. Time of death of prenatal lethals. Genetics. 1979 May;92(1):205-13
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 2610206C17Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr67599	Chr7:84399265-84399274 (+)	60,422 bp