Hoxaas3 MGI Mouse Gene Detail - MGI:1919878 - Hoxa cluster antisense RNA 3

Sequence Map

Chr6:52178104-52190577 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1919878	antisense lncRNA gene	Chr6:52152197-52192056 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004271	antisense lncRNA gene	Chr6:51410642-51456284 (+)
A/J	MGP_AJ_G0004249	antisense lncRNA gene	Chr6:49010831-49050918 (+)
AKR/J	MGP_AKRJ_G0004230	antisense lncRNA gene	Chr6:50717758-50757364 (+)
BALB/cJ	MGP_BALBcJ_G0004236	antisense lncRNA gene	Chr6:49370084-49411587 (+)
C3H/HeJ	MGP_C3HHeJ_G0004184	antisense lncRNA gene	Chr6:50724935-50766396 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004385	antisense lncRNA gene	Chr6:52548223-52592568 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003858	antisense lncRNA gene	Chr6:46658792-46698741 (+)
CAST/EiJ	MGP_CASTEiJ_G0004146	antisense lncRNA gene	Chr6:50537255-50581348 (+)
CBA/J	MGP_CBAJ_G0004178	antisense lncRNA gene	Chr6:54749744-54790511 (+)
DBA/2J	MGP_DBA2J_G0004194	antisense lncRNA gene	Chr6:48933936-48973349 (+)
FVB/NJ	MGP_FVBNJ_G0004210	antisense lncRNA gene	Chr6:48543779-48583819 (+)
LP/J	MGP_LPJ_G0004272	antisense lncRNA gene	Chr6:51395379-51434967 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004200	antisense lncRNA gene	Chr6:57379944-57421387 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004382	antisense lncRNA gene	Chr6:50643167-50686039 (+)
PWK/PhJ	MGP_PWKPhJ_G0004099	antisense lncRNA gene	Chr6:48555867-48597232 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004043	antisense lncRNA gene	Chr6:49978580-50021442 (+)
WSB/EiJ	MGP_WSBEiJ_G0004182	antisense lncRNA gene	Chr6:50657941-50702180 (+)

Vertebrate Orthology Source

Alliance of Genome Resources

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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Representative Sequences				Length	Strain/Species	Flank
	genomic	72628	NCBI Gene Model \| MGI Sequence Detail	12474	C57BL/6J	± kb
	transcript	NR_015611	RefSeq \| MGI Sequence Detail	835	C57BL/6

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Summaries

All 18

Phenotypes 8
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:207500 Berlivet S, et al., Clustering of tissue-specific sub-TADs accompanies the regulation of HoxA genes in developing limbs. PLoS Genet. 2013 Dec;9(12):e1004018

TSS for Hoxaas3:

(View these features in JBrowse)

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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