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Swi5 Gene Detail
Summary
  • Symbol
    Swi5
  • Name
    SWI5 recombination repair homolog (yeast)
  • Synonyms
    1500019F05Rik, 2900010J23Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1920181
    NCBI Gene: 72931
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:32168828-32178087 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 22.09 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    287 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920181
 protein coding gene Chr2:32168817-32178154 (-)
129S1/SvImJ MGP_129S1SvImJ_G0025600
 protein coding gene Chr2:30724024-30733283 (-)
A/J MGP_AJ_G0025578
 protein coding gene Chr2:29420690-29429946 (-)
AKR/J MGP_AKRJ_G0025547
 protein coding gene Chr2:30462768-30474570 (-)
BALB/cJ MGP_BALBcJ_G0025574
 protein coding gene Chr2:29547161-29556420 (-)
C3H/HeJ MGP_C3HHeJ_G0025335
 protein coding gene Chr2:30361318-30371398 (-)
C57BL/6NJ MGP_C57BL6NJ_G0026019
 protein coding gene Chr2:31658015-31667274 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0023427
 protein coding gene Chr2:28149539-28158520 (-)
CAST/EiJ MGP_CASTEiJ_G0024797
 protein coding gene Chr2:30298699-30307958 (-)
CBA/J MGP_CBAJ_G0025312
 protein coding gene Chr2:32842970-32852566 (-)
DBA/2J MGP_DBA2J_G0025445
 protein coding gene Chr2:29188926-29198185 (-)
FVB/NJ MGP_FVBNJ_G0025408
 protein coding gene Chr2:29062285-29071835 (-)
LP/J MGP_LPJ_G0025531
 protein coding gene Chr2:30597090-30606439 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0025438
 protein coding gene Chr2:32510995-32520254 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0026077
 protein coding gene Chr2:30350791-30360040 (-)
PWK/PhJ MGP_PWKPhJ_G0024544
 protein coding gene Chr2:29093262-29102661 (-)
SPRET/EiJ MGP_SPRETEiJ_G0024344
 protein coding gene Chr2:30501806-30515331 (-)
WSB/EiJ MGP_WSBEiJ_G0024865
 protein coding gene Chr2:30522889-30532155 (-)



Homology
more
  • Human Ortholog
    SWI5, SWI5 homologous recombination repair protein
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SWI5, SWI5 homologous recombination repair protein
  • Synonyms
    C9orf119, SAE3
  • Links
    NCBI Gene ID: 375757
    neXtProt AC: NX_Q1ZZU3
    UniProt: Q1ZZU3

  • Chr Location
    9q34.11; chr9:128275356-128316123 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    10
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    707
  • Tissues
    1
  • cDNA Data
    196
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000044627 Ensembl Gene Model | MGI Sequence Detail 9260 C57BL/6J ±  kb
transcript ENSMUST00000140406 Ensembl | MGI Sequence Detail 919 Not Applicable  
polypeptide ENSMUSP00000139369 Ensembl | MGI Sequence Detail 140 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 197
    cDNA 197

    Microarray probesets 3
Other
Accession IDs
less
MGI:1925552, MGI:2138832
References
more
  • Summaries
    All 35
    Developmental Gene Expression 1
    Gene Ontology 4
    Phenotypes 8
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory