Etaa1os Gene Detail

Summary

• Symbol
  Etaa1os
• Name
  Ewing tumor-associated antigen 1, opposite strand
• Synonyms
  2900053O20Rik, 4930542E09Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1920221
  NCBI Gene: 102633673
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:17903970-17909582 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 10.44 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  380 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920221	antisense lncRNA gene	Chr11:17903955-17928971 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002924	antisense lncRNA gene	Chr11:15384032-15394478 (+)
A/J	MGP_AJ_G0002901	antisense lncRNA gene	Chr11:14870283-14881349 (+)
AKR/J	MGP_AKRJ_G0002882	antisense lncRNA gene	Chr11:15388877-15394384 (+)
BALB/cJ	MGP_BALBcJ_G0002889	antisense lncRNA gene	Chr11:14990246-14995982 (+)
C3H/HeJ	MGP_C3HHeJ_G0002844	antisense lncRNA gene	Chr11:15334555-15340906 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003031	antisense lncRNA gene	Chr11:16037158-16042762 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002573	antisense lncRNA gene	Chr11:13999530-14004974 (+)
CAST/EiJ	MGP_CASTEiJ_G0002816	antisense lncRNA gene	Chr11:15290553-15295981 (+)
CBA/J	MGP_CBAJ_G0002841	antisense lncRNA gene	Chr11:16852920-16861750 (+)
DBA/2J	MGP_DBA2J_G0002848	antisense lncRNA gene	Chr11:14858903-14864583 (+)
FVB/NJ	MGP_FVBNJ_G0002867	antisense lncRNA gene	Chr11:14631715-14637260 (+)
LP/J	MGP_LPJ_G0002923	antisense lncRNA gene	Chr11:15530301-15536100 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002855	antisense lncRNA gene	Chr11:17305131-17310939 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003034	antisense lncRNA gene	Chr11:15484949-15490614 (+)
PWK/PhJ	MGP_PWKPhJ_G0002774	antisense lncRNA gene	Chr11:14816377-14822173 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002723	antisense lncRNA gene	Chr11:15224457-15225605 (+)
WSB/EiJ	MGP_WSBEiJ_G0002845	antisense lncRNA gene	Chr11:15165294-15169669 (+)

Homology

• Gene Tree
  Etaa1os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Etaa1os
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  2

• Ensembl
  ENSMUSG00000086468 (Evidence)
• NCBI Gene
  102633673

Representative Sequences			Length	Strain/Species
genomic	102633673	NCBI Gene Model | MGI Sequence Detail	5613	C57BL/6J
transcript	NR_131915	RefSeq | MGI Sequence Detail	554	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

Other
Accession IDs

MGI:1925440

References

• Summaries
  All 13

  Phenotypes 4
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for Etaa1os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100472	Chr11:17903492-17903514 (+)	-467 bp
Tssr100473	Chr11:17903968-17903980 (+)	4 bp
Tssr100474	Chr11:17903984-17904031 (+)	38 bp