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Mir100hg Gene Detail
Summary
  • Symbol
    Mir100hg
  • Name
    Mir100 Mirlet7a-2 Mir125b-1 cluster host gene
  • Synonyms
    2610203C20Rik, 3110039I08Rik, D230004N17Rik
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1920394
    NCBI Gene: 73144
  • Alliance
    gene page
  • Transcription Start Sites
    24 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:41287822-41526481 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 23.32 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    6541 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920394
 lncRNA gene Chr9:41238321-41628290 (+)
129S1/SvImJ MGP_129S1SvImJ_G0015736
 unclassified non-coding RNA gene Chr9:39646629-39916599 (+)
A/J MGP_AJ_G0015713
 unclassified non-coding RNA gene Chr9:38624733-38873952 (+)
AKR/J MGP_AKRJ_G0015677
 unclassified non-coding RNA gene Chr9:39348866-39605644 (+)
BALB/cJ MGP_BALBcJ_G0015674
 unclassified non-coding RNA gene Chr9:38363715-38606421 (+)
C3H/HeJ MGP_C3HHeJ_G0015496
 unclassified non-coding RNA gene Chr9:39871162-40125644 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016130
 unclassified non-coding RNA gene Chr9:40913947-41172846 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0013856
 unclassified non-coding RNA gene Chr9:38254259-38494796 (+)
CAST/EiJ MGP_CASTEiJ_G0015051
 unclassified non-coding RNA gene Chr9:39631733-39890826 (+)
CBA/J MGP_CBAJ_G0015476
 unclassified non-coding RNA gene Chr9:42327130-42613550 (+)
DBA/2J MGP_DBA2J_G0015574
 unclassified non-coding RNA gene Chr9:38549604-38792235 (+)
FVB/NJ MGP_FVBNJ_G0015579
 unclassified non-coding RNA gene Chr9:37782391-38027736 (+)
LP/J MGP_LPJ_G0015654
 unclassified non-coding RNA gene Chr9:39929182-40194818 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0015602
 unclassified non-coding RNA gene Chr9:44368659-44634953 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016172
 unclassified non-coding RNA gene Chr9:39279479-39537584 (+)
PWK/PhJ MGP_PWKPhJ_G0014832
 unclassified non-coding RNA gene Chr9:38371563-38620710 (+)
SPRET/EiJ MGP_SPRETEiJ_G0014620
 unclassified non-coding RNA gene Chr9:39521661-39767154 (+)
WSB/EiJ MGP_WSBEiJ_G0015155
 unclassified non-coding RNA gene Chr9:39309102-39565098 (+)



Homology
more
  • Human Ortholog
    MIR100HG, mir-100-let-7a-2-mir-125b-1 cluster host gene
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    MIR100HG, mir-100-let-7a-2-mir-125b-1 cluster host gene
  • Synonyms
    AGD1, linc-NeD125, lncRNA-N2
  • Links
    NCBI Gene ID: 399959

  • Chr Location
    11q24.1; chr11:122028325-122556721 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    707
  • Tissues
    1
  • cDNA Data
    71
  • Literature Summary
    3
Sequences &
Gene Models
less
  • All Sequences
    212
  • RefSeq
    6
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 73144 NCBI Gene Model | MGI Sequence Detail 238660 C57BL/6J ±  kb
transcript NR_131930 RefSeq | MGI Sequence Detail 3053 C57BL/6  
polypeptide Q3URL6 UniProt | EBI | MGI Sequence Detail 156 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 72
    cDNA 71
    Other 1

    Microarray probesets 2
Other
Accession IDs
less
MGI:1917705, MGI:2444825, MGI:6297109
References
more
  • Summaries
    All 21
    Developmental Gene Expression 3
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:331893 Yang J, et al., Identifying key m(6)A-methylated lncRNAs and genes associated with neural tube defects via integrative MeRIP and RNA sequencing analyses. Front Genet. 2022;13:974357
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory