1700023C21Rik Gene Detail

Summary

• Symbol
  1700023C21Rik
• Name
  RIKEN cDNA 1700023C21 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1920507
  NCBI Gene: 73257
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:109736704-109739302 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 72.71 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  235 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920507	lncRNA gene	Chr11:109736704-109739302 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005306	lincRNA gene	Chr11:113426513-113429114 (+)
A/J	MGP_AJ_G0005289	lincRNA gene	Chr11:108528850-108531448 (+)
AKR/J	MGP_AKRJ_G0005268	lincRNA gene	Chr11:111783987-111787087 (+)
BALB/cJ	MGP_BALBcJ_G0005271	lincRNA gene	Chr11:108956463-108959097 (+)
C3H/HeJ	MGP_C3HHeJ_G0005220	lincRNA gene	Chr11:112077234-112079835 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005423	lincRNA gene	Chr11:116856252-116858848 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0005167	lincRNA gene	Chr11:113227854-113230491 (+)
CBA/J	MGP_CBAJ_G0005209	lincRNA gene	Chr11:121687634-121690234 (+)
DBA/2J	MGP_DBA2J_G0005227	lincRNA gene	Chr11:107999042-108001640 (+)
FVB/NJ	MGP_FVBNJ_G0005252	lincRNA gene	Chr11:107487275-107489873 (+)
LP/J	MGP_LPJ_G0005308	lincRNA gene	Chr11:113842254-113844850 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005234	lincRNA gene	Chr11:120817637-120820234 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005427	lincRNA gene	Chr11:112343141-112345740 (+)
PWK/PhJ	MGP_PWKPhJ_G0005116	lincRNA gene	Chr11:109165130-109167752 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005037	lincRNA gene	Chr11:112137119-112139762 (+)
WSB/EiJ	MGP_WSBEiJ_G0005215	lincRNA gene	Chr11:112270842-112273443 (+)

Homology

• Gene Tree
  1700023C21Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000087393 (Evidence)
• NCBI Gene
  73257

Representative Sequences			Length	Strain/Species
genomic	73257	NCBI Gene Model | MGI Sequence Detail	2599	C57BL/6J
transcript	NR_045909	RefSeq | MGI Sequence Detail	389	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700023C21Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr105704	Chr11:109736654-109736664 (+)	-45 bp
Tssr105705	Chr11:109736690-109736696 (+)	-11 bp