Spanxn4 Gene Detail

Summary

• Symbol
  Spanxn4
• Name
  SPANX family, member N4
• Synonyms
  1700047L15Rik

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:1920559
  NCBI Gene: 73309
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr12:62734608-62735031 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 26.70 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  142 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920559	protein coding gene	Chr12:62734573-62735122 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0019773	protein coding gene	Chr12:62097708-62098130 (+)
A/J	MGP_AJ_G0019732	protein coding gene	Chr12:59803594-59804016 (+)
AKR/J	MGP_AKRJ_G0019707	protein coding gene	Chr12:61700294-61700716 (+)
BALB/cJ	MGP_BALBcJ_G0019712	protein coding gene	Chr12:60198820-60199242 (+)
C3H/HeJ	MGP_C3HHeJ_G0019517	protein coding gene	Chr12:62049809-62050231 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0020164	protein coding gene	Chr12:63968687-63969109 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0017784	protein coding gene	Chr12:57815837-57816259 (+)
CAST/EiJ	MGP_CASTEiJ_G0019069	protein coding gene	Chr12:56713306-56713728 (+)
CBA/J	MGP_CBAJ_G0019486	protein coding gene	Chr12:66353794-66354216 (+)
DBA/2J	MGP_DBA2J_G0019602	protein coding gene	Chr12:59739737-59740159 (+)
FVB/NJ	MGP_FVBNJ_G0019590	protein coding gene	Chr12:58853262-58853684 (+)
LP/J	MGP_LPJ_G0019674	protein coding gene	Chr12:62142880-62143302 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0019628	protein coding gene	Chr12:68658263-68658685 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0020198	protein coding gene	Chr12:61100705-61101127 (+)
PWK/PhJ	MGP_PWKPhJ_G0018835	protein coding gene	Chr12:53981954-53982376 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0018629	protein coding gene	Chr12:55455625-55456047 (+)
WSB/EiJ	MGP_WSBEiJ_G0019120	protein coding gene	Chr12:61604476-61604898 (+)

Homology

• Gene Tree
  Spanxn4
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Find Mice (IMSR)
  5 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000091396 (Evidence)
• NCBI Gene
  73309

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091396	Ensembl Gene Model | MGI Sequence Detail	424	C57BL/6J
transcript	ENSMUST00000172433	Ensembl | MGI Sequence Detail	424	Not Applicable
polypeptide	C0IQA4	UniProt | EBI | MGI Sequence Detail	140	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 1

References

• Summaries
  All 15

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

TSS for Spanxn4:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr113588	Chr12:62734555-62734558 (+)	-51 bp
Tssr113589	Chr12:62734572-62734600 (+)	-22 bp