About   Help   FAQ
1700040F17Rik Gene Detail
Summary
  • Symbol
    1700040F17Rik
  • Name
    RIKEN cDNA 1700040F17 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1920584
    NCBI Gene: 73334
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr15:55299511-55302416 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 21.96 cM, cytoband D2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    189 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920584
 lncRNA gene Chr15:55299511-55302416 (-)
129S1/SvImJ MGP_129S1SvImJ_G0003283
 antisense lncRNA gene Chr15:54519128-54522033 (-)
A/J MGP_AJ_G0003259
 antisense lncRNA gene Chr15:52362397-52365302 (-)
AKR/J MGP_AKRJ_G0003242
 antisense lncRNA gene Chr15:53858820-53861725 (-)
BALB/cJ MGP_BALBcJ_G0003248
 antisense lncRNA gene Chr15:52587043-52589948 (-)
C3H/HeJ MGP_C3HHeJ_G0003201
 antisense lncRNA gene Chr15:53933311-53936216 (-)
C57BL/6NJ MGP_C57BL6NJ_G0003390
 antisense lncRNA gene Chr15:56644652-56647557 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0002913
 antisense lncRNA gene Chr15:49593944-49596834 (-)
CAST/EiJ MGP_CASTEiJ_G0003167
 antisense lncRNA gene Chr15:54528328-54531225 (-)
CBA/J MGP_CBAJ_G0003198
 antisense lncRNA gene Chr15:58618967-58621872 (-)
DBA/2J MGP_DBA2J_G0003203
 antisense lncRNA gene Chr15:52252055-52254960 (-)
FVB/NJ MGP_FVBNJ_G0003222
 antisense lncRNA gene Chr15:51378432-51381337 (-)
LP/J MGP_LPJ_G0003276
 antisense lncRNA gene Chr15:54319118-54322023 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0003211
 antisense lncRNA gene Chr15:63719616-63722521 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0003392
 antisense lncRNA gene Chr15:54215319-54218224 (-)
PWK/PhJ MGP_PWKPhJ_G0003124
 antisense lncRNA gene Chr15:52331862-52334759 (-)
SPRET/EiJ MGP_SPRETEiJ_G0003070
 antisense lncRNA gene Chr15:53936785-53939688 (-)
WSB/EiJ MGP_WSBEiJ_G0003201
 antisense lncRNA gene Chr15:54172321-54175226 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    2
Sequences &
Gene Models
less
  • All Sequences
    22
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000101568 Ensembl Gene Model | MGI Sequence Detail 2906 C57BL/6J ±  kb
transcript ENSMUST00000187158 Ensembl | MGI Sequence Detail 817 Not Applicable  
polypeptide Q9D9P0 UniProt | EBI | MGI Sequence Detail 115 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR040433 Spermatid nuclear transition protein
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2

    Microarray probesets 1
References
more
  • Summaries
    All 15
    Phenotypes 5
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory