1700047K16Rik Gene Detail

Summary

• Symbol
  1700047K16Rik
• Name
  RIKEN cDNA 1700047K16 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1920585
  NCBI Gene: 73335
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:58213814-58215265 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 36.19 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  93 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920585	lncRNA gene	Chr11:58213814-58215265 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015172	unclassified non-coding RNA gene	Chr11:58011021-58012472 (+)
A/J	MGP_AJ_G0015146	unclassified non-coding RNA gene	Chr11:55811653-55813104 (+)
AKR/J	MGP_AKRJ_G0015109	unclassified non-coding RNA gene	Chr11:57639024-57640475 (+)
BALB/cJ	MGP_BALBcJ_G0015108	unclassified non-coding RNA gene	Chr11:56150289-56151740 (+)
C3H/HeJ	MGP_C3HHeJ_G0014932	unclassified non-coding RNA gene	Chr11:57586537-57587988 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015565	unclassified non-coding RNA gene	Chr11:59804016-59805467 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013309	unclassified non-coding RNA gene	Chr11:53158478-53159914 (+)
CAST/EiJ	MGP_CASTEiJ_G0014485	unclassified non-coding RNA gene	Chr11:57678626-57680077 (+)
CBA/J	MGP_CBAJ_G0014911	unclassified non-coding RNA gene	Chr11:62558353-62559804 (+)
DBA/2J	MGP_DBA2J_G0015004	unclassified non-coding RNA gene	Chr11:55458009-55459460 (+)
FVB/NJ	MGP_FVBNJ_G0015016	unclassified non-coding RNA gene	Chr11:55148255-55149706 (+)
LP/J	MGP_LPJ_G0015085	unclassified non-coding RNA gene	Chr11:58559905-58561356 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015042	unclassified non-coding RNA gene	Chr11:63659885-63661336 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015604	unclassified non-coding RNA gene	Chr11:57694513-57695964 (+)
PWK/PhJ	MGP_PWKPhJ_G0014277	unclassified non-coding RNA gene	Chr11:56064530-56065981 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014064	unclassified non-coding RNA gene	Chr11:57573321-57574759 (+)
WSB/EiJ	MGP_WSBEiJ_G0014588	unclassified non-coding RNA gene	Chr11:57323231-57324682 (+)

Homology

• Gene Tree
  1700047K16Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 1700047K16Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000087347 (Evidence)
• NCBI Gene
  73335

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087347	Ensembl Gene Model | MGI Sequence Detail	1452	C57BL/6J
transcript	ENSMUST00000145068	Ensembl | MGI Sequence Detail	886	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Developmental Gene Expression 1

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:356411 Bao J, et al., Expression profiling reveals developmentally regulated lncRNA repertoire in the mouse male germline. Biol Reprod. 2013 Nov;89(5):107