1700049L16Rik Pseudogene Detail

Summary

• Symbol
  1700049L16Rik
• Name
  RIKEN cDNA 1700049L16 gene

• Feature Type
  pseudogene
• IDs
  MGI:1920633
  NCBI Gene: 108950
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:71815922-71816464 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 37.15 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  112 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920633	pseudogene	Chr10:71815715-71816535 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010528	pseudogene	Chr10:71999941-72000745 (-)
A/J	MGP_AJ_G0010521	pseudogene	Chr10:69531137-69531941 (-)
AKR/J	MGP_AKRJ_G0010481	pseudogene	Chr10:71439424-71440228 (-)
BALB/cJ	MGP_BALBcJ_G0010495	pseudogene	Chr10:69719914-69720718 (-)
C3H/HeJ	MGP_C3HHeJ_G0010419	pseudogene	Chr10:71418841-71419645 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0010763	pseudogene	Chr10:74493004-74493808 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009432	pseudogene	Chr10:65995737-65996543 (-)
CAST/EiJ	MGP_CASTEiJ_G0010244	pseudogene	Chr10:71567604-71568408 (-)
CBA/J	MGP_CBAJ_G0010388	pseudogene	Chr10:77432792-77433596 (-)
DBA/2J	MGP_DBA2J_G0010421	pseudogene	Chr10:68876024-68876828 (-)
FVB/NJ	MGP_FVBNJ_G0010437	pseudogene	Chr10:68031030-68031834 (-)
LP/J	MGP_LPJ_G0010510	pseudogene	Chr10:72425324-72426128 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010408	pseudogene	Chr10:79469884-79470688 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010736	pseudogene	Chr10:71381554-71382358 (-)
PWK/PhJ	MGP_PWKPhJ_G0010143	pseudogene	Chr10:68685458-68686261 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0009956	pseudogene	Chr10:70716094-70716896 (-)
WSB/EiJ	MGP_WSBEiJ_G0010307	pseudogene	Chr10:71369842-71370646 (-)

Homology

• Gene Tree
  1700049L16Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 1700049L16Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000043859 (Evidence)
• NCBI Gene
  108950

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000043859	Ensembl Gene Model | MGI Sequence Detail	543	C57BL/6J
transcript	ENSMUST00000049520	Ensembl | MGI Sequence Detail	543	Not Applicable
polypeptide	Q8BW07	UniProt | EBI | MGI Sequence Detail	180	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR033335 Microtubule-associated protein Jupiter

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 2

References

• Summaries
  All 15

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700049L16Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr98086	Chr10:71816512-71816548 (-)	-66 bp
Tssr98085	Chr10:71816500-71816511 (-)	-42 bp