1700055D18Rik Gene Detail

Summary

• Symbol
  1700055D18Rik
• Name
  RIKEN cDNA 1700055D18 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1920655
  NCBI Gene: 73405
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr4:45012810-45014351 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 23.67 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  145 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920655	lncRNA gene	Chr4:45011687-45015406 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003896	antisense lncRNA gene	Chr4:43219254-43222973 (+)
A/J	MGP_AJ_G0003876	antisense lncRNA gene	Chr4:41677224-41680943 (+)
AKR/J	MGP_AKRJ_G0003853	antisense lncRNA gene	Chr4:42669096-42672815 (+)
BALB/cJ	MGP_BALBcJ_G0003863	antisense lncRNA gene	Chr4:41761588-41765307 (+)
C3H/HeJ	MGP_C3HHeJ_G0003809	antisense lncRNA gene	Chr4:43278390-43282109 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004010	antisense lncRNA gene	Chr4:44862106-44865825 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0003774	antisense lncRNA gene	Chr4:42820844-42824572 (+)
CBA/J	MGP_CBAJ_G0003802	antisense lncRNA gene	Chr4:46240791-46244510 (+)
DBA/2J	MGP_DBA2J_G0003819	antisense lncRNA gene	Chr4:41575640-41579359 (+)
FVB/NJ	MGP_FVBNJ_G0003837	antisense lncRNA gene	Chr4:40799650-40803369 (+)
LP/J	MGP_LPJ_G0003898	antisense lncRNA gene	Chr4:43277664-43281383 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003825	antisense lncRNA gene	Chr4:49397282-49401001 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004006	antisense lncRNA gene	Chr4:42872128-42875847 (+)
PWK/PhJ	MGP_PWKPhJ_G0003729	antisense lncRNA gene	Chr4:41637005-41640719 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003675	antisense lncRNA gene	Chr4:42389965-42395693 (+)
WSB/EiJ	MGP_WSBEiJ_G0003809	antisense lncRNA gene	Chr4:42756675-42760389 (+)

Homology

• Gene Tree
  1700055D18Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  3 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000070997 (Evidence)
• NCBI Gene
  73405

Representative Sequences			Length	Strain/Species
genomic	73405	NCBI Gene Model | MGI Sequence Detail	1542	C57BL/6J
transcript	NR_166789	RefSeq | MGI Sequence Detail	1542	C57BL/6
polypeptide	Q8C9D1	UniProt | EBI | MGI Sequence Detail	175	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 2

References

• Summaries
  All 14

  Phenotypes 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 1700055D18Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr37046	Chr4:45011728-45011748 (+)	-1,072 bp
Tssr37047	Chr4:45011758-45011771 (+)	-1,045 bp
Tssr37048	Chr4:45012168-45012204 (+)	-624 bp
Tssr37049	Chr4:45012795-45012844 (+)	10 bp
Tssr37050	Chr4:45013531-45013536 (+)	724 bp