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Rnf38 Gene Detail
Summary
  • Symbol
    Rnf38
  • Name
    ring finger protein 38
  • Synonyms
    1700065B19Rik, 2610202O07Rik, Oip1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1920719
    NCBI Gene: 73469
  • Alliance
    gene page
  • Transcription Start Sites
    22 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:44126210-44233789 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 23.13 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2416 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920719
 protein coding gene Chr4:44126210-44233929 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028233
 protein coding gene Chr4:42277762-42390599 (-)
A/J MGP_AJ_G0028190
 protein coding gene Chr4:40774736-40877096 (-)
AKR/J MGP_AKRJ_G0028142
 protein coding gene Chr4:41734506-41843721 (-)
BALB/cJ MGP_BALBcJ_G0028210
 protein coding gene Chr4:40871237-40971726 (-)
C3H/HeJ MGP_C3HHeJ_G0027932
 protein coding gene Chr4:42345296-42456443 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028651
 protein coding gene Chr4:43890996-44005004 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025961
 protein coding gene Chr4:38202307-38306277 (-)
CAST/EiJ MGP_CASTEiJ_G0027371
 protein coding gene Chr4:41862227-41976765 (-)
CBA/J MGP_CBAJ_G0027898
 protein coding gene Chr4:45249889-45363849 (-)
DBA/2J MGP_DBA2J_G0028047
 protein coding gene Chr4:40679961-40782406 (-)
FVB/NJ MGP_FVBNJ_G0028014
 protein coding gene Chr4:39910353-40014506 (-)
LP/J MGP_LPJ_G0028146
 protein coding gene Chr4:42351558-42460559 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0028038
 protein coding gene Chr4:48440778-48548781 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028687
 protein coding gene Chr4:41947196-42052158 (-)
PWK/PhJ MGP_PWKPhJ_G0027095
 protein coding gene Chr4:40729446-40831641 (-)
SPRET/EiJ MGP_SPRETEiJ_G0026924
 protein coding gene Chr4:41470245-41575572 (-)
WSB/EiJ MGP_WSBEiJ_G0027449
 protein coding gene Chr4:41819622-41923235 (-)



Homology
more
  • Human Ortholog
    RNF38, ring finger protein 38
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RNF38, ring finger protein 38
  • Links
    NCBI Gene ID: 152006
    neXtProt AC: NX_Q9H0F5
    UniProt: Q9H0F5

  • Chr Location
    9p13.2; chr9:36336396-36487669 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    13 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    11
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    829
  • Tissues
    34
  • cDNA Data
    185
  • Literature Summary
    5
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000035696 Ensembl Gene Model | MGI Sequence Detail 107580 C57BL/6J ±  kb
    transcript ENSMUST00000098098 Ensembl | MGI Sequence Detail 5061 Not Applicable  
    polypeptide ENSMUSP00000095702 Ensembl | MGI Sequence Detail 464 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 187
      cDNA 185
      Primer pair 2

      Microarray probesets 6
    Other
    Accession IDs
    less
    MGI:1917690, MGI:2140173
    References
    more
    • Summaries
      All 44
      Developmental Gene Expression 5
      Gene Ontology 6
      Phenotypes 13
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory