1700084J12Rik Pseudogene Detail

Summary

• Symbol
  1700084J12Rik
• Name
  RIKEN cDNA 1700084J12 gene

• Feature Type
  pseudogene
• IDs
  MGI:1920736
  NCBI Gene: 73486
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr15:33405355-33406085 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 13.74 cM, cytoband B3.3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  134 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920736	pseudogene	Chr15:33405352-33406085 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0039670	pseudogene	Chr15:31708654-31710641 (-)
A/J	MGP_AJ_G0039667	pseudogene	Chr15:30472715-30474706 (-)
AKR/J	MGP_AKRJ_G0039593	pseudogene	Chr15:31289315-31291297 (-)
BALB/cJ	MGP_BALBcJ_G0039641	pseudogene	Chr15:30482239-30484222 (-)
C3H/HeJ	MGP_C3HHeJ_G0039303	pseudogene	Chr15:31286676-31288622 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0040195	pseudogene	Chr15:32933614-32936900 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036838	pseudogene	Chr15:28410164-28412108 (-)
CAST/EiJ	MGP_CASTEiJ_G0038424	pseudogene	Chr15:31709288-31711270 (-)
CBA/J	MGP_CBAJ_G0039272	pseudogene	Chr15:33893607-33895554 (-)
DBA/2J	MGP_DBA2J_G0039464	pseudogene	Chr15:30258163-30260110 (-)
FVB/NJ	MGP_FVBNJ_G0039421	pseudogene	Chr15:29745309-29747298 (-)
LP/J	MGP_LPJ_G0039507	pseudogene	Chr15:31618130-31620117 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039425	pseudogene	Chr15:36950507-36952491 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040300	pseudogene	Chr15:31490657-31492637 (-)
PWK/PhJ	MGP_PWKPhJ_G0038098	pseudogene	Chr15:30367409-30369394 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0037849	pseudogene	Chr15:31221714-31223696 (-)
WSB/EiJ	MGP_WSBEiJ_G0038656	pseudogene	Chr15:31447194-31449179 (-)

Homology

• Gene Tree
  1700084J12Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving 1700084J12Rik
• Incidental Mutations
  APF
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000058101 (Evidence)
• NCBI Gene
  73486

Representative Sequences			Length	Strain/Species
genomic	73486	NCBI Gene Model | MGI Sequence Detail	731	C57BL/6J
transcript	NR_033608	RefSeq | MGI Sequence Detail	731	Not Specified
polypeptide	Q9D9F1	UniProt | EBI | MGI Sequence Detail	123	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR039699 Large ribosomal subunit protein uL30
  IPR036919 Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamily
  IPR016082 Large ribosomal subunit protein uL30-like, ferredoxin-like fold domain

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 15

  Phenotypes 5
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573