1700108F19Rik Gene Detail

Summary

• Symbol
  1700108F19Rik
• Name
  RIKEN cDNA 1700108F19 gene
• Synonyms
  1700020I02Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1920814
  NCBI Gene: 73272
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:76915008-76924548 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 40.63 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  443 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920814	lncRNA gene	Chr14:76910403-76924609 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015277	unclassified non-coding RNA gene	Chr14:71629134-71644064 (+)
A/J	MGP_AJ_G0015251	unclassified non-coding RNA gene	Chr14:69953689-69968590 (+)
AKR/J	MGP_AKRJ_G0015214	unclassified non-coding RNA gene	Chr14:72039407-72053593 (+)
BALB/cJ	MGP_BALBcJ_G0015215	unclassified non-coding RNA gene	Chr14:69757948-69772940 (+)
C3H/HeJ	MGP_C3HHeJ_G0015039	unclassified non-coding RNA gene	Chr14:71755281-71770697 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015670	unclassified non-coding RNA gene	Chr14:74734797-74750336 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013411	unclassified non-coding RNA gene	Chr14:67552259-67567453 (+)
CAST/EiJ	MGP_CASTEiJ_G0014590	unclassified non-coding RNA gene	Chr14:68466846-68482006 (+)
CBA/J	MGP_CBAJ_G0015019	unclassified non-coding RNA gene	Chr14:77132307-77148594 (+)
DBA/2J	MGP_DBA2J_G0015112	unclassified non-coding RNA gene	Chr14:69348502-69363416 (+)
FVB/NJ	MGP_FVBNJ_G0015120	unclassified non-coding RNA gene	Chr14:68693980-68708070 (+)
LP/J	MGP_LPJ_G0015193	unclassified non-coding RNA gene	Chr14:72741842-72756595 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015147	unclassified non-coding RNA gene	Chr14:75804477-75818974 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015709	unclassified non-coding RNA gene	Chr14:71313502-71329401 (+)
PWK/PhJ	MGP_PWKPhJ_G0014382	unclassified non-coding RNA gene	Chr14:66120338-66134754 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014169	unclassified non-coding RNA gene	Chr14:67276845-67293458 (+)
WSB/EiJ	MGP_WSBEiJ_G0014697	unclassified non-coding RNA gene	Chr14:71668990-71683883 (+)

Homology

• Gene Tree
  1700108F19Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Gene trapped
  5
• Genomic Mutations
  1 involving 1700108F19Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  9

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  1

• Ensembl
  ENSMUSG00000101009 (Evidence)
• NCBI Gene
  73272

Representative Sequences			Length	Strain/Species
genomic	73272	NCBI Gene Model | MGI Sequence Detail	9541	C57BL/6J
transcript	NR_015485	RefSeq | MGI Sequence Detail	872	C57BL/6

Molecular
Reagents

• All nucleic 9

  cDNA 9

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:1920522, MGI:2145847

References

• Summaries
  All 18

  Phenotypes 4
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 1700108F19Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr126737	Chr14:76915013-76915034 (+)	16 bp