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Fcf1 Gene Detail
Summary
  • Symbol
    Fcf1
  • Name
    FCF1 rRNA processing protein
  • Synonyms
    1110008B24Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1920986
    NCBI Gene: 73736
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:85017704-85030077 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, 39.48 cM, cytoband D3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    400 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920986
 protein coding gene Chr12:85017671-85030077 (+)
129S1/SvImJ MGP_129S1SvImJ_G0019949
 protein coding gene Chr12:85721521-85736936 (+)
A/J MGP_AJ_G0019906
 protein coding gene Chr12:82470720-82484984 (+)
AKR/J MGP_AKRJ_G0019882
 protein coding gene Chr12:84696104-84708978 (+)
BALB/cJ MGP_BALBcJ_G0019886
 protein coding gene Chr12:82799595-82820080 (+)
C3H/HeJ MGP_C3HHeJ_G0019692
 protein coding gene Chr12:85176272-85189358 (+)
C57BL/6NJ MGP_C57BL6NJ_G0020337
 protein coding gene Chr12:88187432-88202270 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0017955
 protein coding gene Chr12:79356874-79369493 (+)
CAST/EiJ MGP_CASTEiJ_G0019241
 protein coding gene Chr12:80141264-80154035 (+)
CBA/J MGP_CBAJ_G0019663
 protein coding gene Chr12:91585816-91600885 (+)
DBA/2J MGP_DBA2J_G0019778
 protein coding gene Chr12:81989849-82002384 (+)
FVB/NJ MGP_FVBNJ_G0019764
 protein coding gene Chr12:80950095-80962818 (+)
LP/J MGP_LPJ_G0019850
 protein coding gene Chr12:85594104-85607137 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0019803
 protein coding gene Chr12:94460726-94477076 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0020371
 protein coding gene Chr12:84303806-84316973 (+)
PWK/PhJ MGP_PWKPhJ_G0019005
 protein coding gene Chr12:76479701-76492107 (+)
SPRET/EiJ MGP_SPRETEiJ_G0018800
 protein coding gene Chr12:78780790-78792792 (+)
WSB/EiJ MGP_WSBEiJ_G0019293
 protein coding gene Chr12:85025144-85037331 (+)



Homology
more
  • Human Ortholog
    FCF1, FCF1 rRNA-processing protein
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    FCF1, FCF1 rRNA-processing protein
  • Synonyms
    Bka, C14orf111, CGI-35, UTP24
  • Links
    NCBI Gene ID: 51077
    neXtProt AC: NX_Q9Y324
    UniProt: Q9Y324

  • Chr Location
    14q24.3; chr14:74713144-74738620 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    9
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    7
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 73736 NCBI Gene Model | MGI Sequence Detail 12374 C57BL/6J ±  kb
transcript NM_028632 RefSeq | MGI Sequence Detail 748 C57BL/6  
polypeptide Q9CTH6 UniProt | EBI | MGI Sequence Detail 198 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 3
References
more
  • Summaries
    All 29
    Gene Ontology 5
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:218306 Wang M, et al., Two orthogonal cleavages separate subunit RNAs in mouse ribosome biogenesis. Nucleic Acids Res. 2014;42(17):11180-91
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory