4930405H06Rik Gene Detail

Summary

• Symbol
  4930405H06Rik
• Name
  RIKEN cDNA 4930405H06 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1921068
  NCBI Gene: 102638465
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:99773695-99774921 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 48.46 cM, cytoband E3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  157 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921068	lncRNA gene	Chr5:99761860-99776338 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004118	antisense lncRNA gene	Chr5:101034425-101035651 (+)
A/J	MGP_AJ_G0004099	antisense lncRNA gene	Chr5:97299445-97300671 (+)
AKR/J	MGP_AKRJ_G0004078	antisense lncRNA gene	Chr5:100505678-100506904 (+)
BALB/cJ	MGP_BALBcJ_G0004085	antisense lncRNA gene	Chr5:98317886-98319112 (+)
C3H/HeJ	MGP_C3HHeJ_G0004032	antisense lncRNA gene	Chr5:100835599-100836825 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004233	antisense lncRNA gene	Chr5:105282285-105283511 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003709	antisense lncRNA gene	Chr5:92581688-92582921 (+)
CAST/EiJ	MGP_CASTEiJ_G0003995	antisense lncRNA gene	Chr5:99493569-99494794 (+)
CBA/J	MGP_CBAJ_G0004026	antisense lncRNA gene	Chr5:108882881-108884107 (+)
DBA/2J	MGP_DBA2J_G0004041	antisense lncRNA gene	Chr5:97488950-97490176 (+)
FVB/NJ	MGP_FVBNJ_G0004059	antisense lncRNA gene	Chr5:96303068-96304294 (+)
LP/J	MGP_LPJ_G0004120	antisense lncRNA gene	Chr5:101658810-101660036 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004048	antisense lncRNA gene	Chr5:114008577-114009803 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004229	antisense lncRNA gene	Chr5:99973030-99974256 (+)
PWK/PhJ	MGP_PWKPhJ_G0003948	antisense lncRNA gene	Chr5:95934366-95935592 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003892	antisense lncRNA gene	Chr5:97681933-97683159 (+)
WSB/EiJ	MGP_WSBEiJ_G0004030	antisense lncRNA gene	Chr5:100302260-100303486 (+)

Homology

• Gene Tree
  4930405H06Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving 4930405H06Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  3

• Ensembl
  ENSMUSG00000090146 (Evidence)
• NCBI Gene
  102638465

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090146	Ensembl Gene Model | MGI Sequence Detail	1227	C57BL/6J
transcript	ENSMUST00000159244	Ensembl | MGI Sequence Detail	791	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 15

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573