Fam98c MGI Mouse Gene Detail - MGI:1921083 - family with sequence similarity 98, member C

Symbol

Fam98c
Name

family with sequence similarity 98, member C
Synonyms

1110006G06Rik, B230110F21Rik

Feature Type

protein coding gene
IDs

MGI:1921083
NCBI Gene: 73833
Alliance

gene page
Transcription Start Sites

6 TSS

Sequence Map

Chr7:28851935-28855653 bp, - strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 7, 16.94 cM
Mapping Data

2 experiments

SNPs within 2kb

229 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921083	protein coding gene	Chr7:28851935-28855659 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0031972	protein coding gene	Chr7:28059888-28063608 (-)
A/J	MGP_AJ_G0031950	protein coding gene	Chr7:27316912-27320634 (-)
AKR/J	MGP_AKRJ_G0031882	protein coding gene	Chr7:28018233-28021956 (-)
BALB/cJ	MGP_BALBcJ_G0031957	protein coding gene	Chr7:27485000-27488722 (-)
C3H/HeJ	MGP_C3HHeJ_G0031676	protein coding gene	Chr7:28423198-28426921 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0032421	protein coding gene	Chr7:28941892-28945615 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0029473	protein coding gene	Chr7:28377284-28380980 (-)
CAST/EiJ	MGP_CASTEiJ_G0031011	protein coding gene	Chr7:21724818-21728542 (-)
CBA/J	MGP_CBAJ_G0031642	protein coding gene	Chr7:30297662-30301385 (-)
DBA/2J	MGP_DBA2J_G0031794	protein coding gene	Chr7:27056657-27060380 (-)
FVB/NJ	MGP_FVBNJ_G0031751	protein coding gene	Chr7:27150247-27153966 (-)
LP/J	MGP_LPJ_G0031874	protein coding gene	Chr7:28351164-28354887 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0031787	protein coding gene	Chr7:29676568-29680291 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0032451	protein coding gene	Chr7:27511822-27515545 (-)
PWK/PhJ	MGP_PWKPhJ_G0030736	protein coding gene	Chr7:22102219-22106038 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0030569	protein coding gene	Chr7:18528807-18532577 (-)
WSB/EiJ	MGP_WSBEiJ_G0031120	protein coding gene	Chr7:27880059-27883786 (-)

Human Ortholog

FAM98C, family with sequence similarity 98 member C

Vertebrate Orthologs

3

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

FAM98C, family with sequence similarity 98 member C
Links

HGNC:27119

NCBI Gene ID: 147965

neXtProt AC: NX_Q17RN3

UniProt: Q17RN3
Chr Location

19q13.2; chr19:38403093-38409088 (+) GRCh38

MGI Vertebrate Homology

Fam98c stringent orthology
1 human;1 mouse;1 rat;1 zebrafish
HCOP

vertebrate homology predictions: FAM98C
Gene Tree

Fam98c

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Phenotype Summary

5 phenotype references

All Mutations and Alleles

3
Gene trapped

1
Targeted

2
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

22 strains or lines available

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All GO Annotations

1
GO References

1

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

8

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

56
RefSeq

4
UniProt

7
CCDS

CCDS52167.1

Ensembl

ENSMUSG00000030590 (Evidence)
NCBI Gene

73833

			Length	Strain/Species	Flank
genomic	73833	NCBI Gene Model \| MGI Sequence Detail	3719	C57BL/6J	± kb
transcript	NM_001146023	RefSeq \| MGI Sequence Detail	1285	C57BL/6
polypeptide	NP_001139495	RefSeq \| MGI Sequence Detail	344	C57BL/6

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UniProt

7 Sequences
InterPro Domains

IPR018797 FAM98

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All nucleic 8

cDNA 8

Microarray probesets 3

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MGI:1925765, MGI:2142034, MGI:2142170

Summaries

All 24

Gene Ontology 1

Phenotypes 5
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

TSS for Fam98c:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr71615	Chr7:28855597-28855635 (-)	37 bp
Tssr71614	Chr7:28855388-28855420 (-)	249 bp
Tssr71613	Chr7:28855361-28855381 (-)	282 bp
Tssr71612	Chr7:28855142-28855155 (-)	504 bp
Tssr71611	Chr7:28855047-28855056 (-)	601 bp
Tssr71610	Chr7:28855022-28855041 (-)	621 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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