Scpep1os Gene Detail

Summary

• Symbol
  Scpep1os
• Name
  serine carboxypeptidase 1, opposite strand
• Synonyms
  4930405P13Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1921171
  NCBI Gene: 73921
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:88796754-88826887 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 54.34 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  512 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921171	antisense lncRNA gene	Chr11:88796754-88826887 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003034	antisense lncRNA gene	Chr11:90663817-90692647 (+)
A/J	MGP_AJ_G0003011	antisense lncRNA gene	Chr11:87131797-87155363 (+)
AKR/J	MGP_AKRJ_G0002992	antisense lncRNA gene	Chr11:89792202-89817034 (+)
BALB/cJ	MGP_BALBcJ_G0002998	antisense lncRNA gene	Chr11:87547312-87572469 (+)
C3H/HeJ	MGP_C3HHeJ_G0002954	antisense lncRNA gene	Chr11:89813731-89839335 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003140	antisense lncRNA gene	Chr11:93417839-93447664 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002679	antisense lncRNA gene	Chr11:84154342-84177620 (+)
CAST/EiJ	MGP_CASTEiJ_G0002924	antisense lncRNA gene	Chr11:90520667-90550475 (+)
CBA/J	MGP_CBAJ_G0002951	antisense lncRNA gene	Chr11:97403398-97442171 (+)
DBA/2J	MGP_DBA2J_G0002957	antisense lncRNA gene	Chr11:86684383-86708842 (+)
FVB/NJ	MGP_FVBNJ_G0002976	antisense lncRNA gene	Chr11:86188792-86212891 (+)
LP/J	MGP_LPJ_G0003033	antisense lncRNA gene	Chr11:91173562-91200267 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002964	antisense lncRNA gene	Chr11:97329280-97363270 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003144	antisense lncRNA gene	Chr11:90003692-90030763 (+)
PWK/PhJ	MGP_PWKPhJ_G0002883	antisense lncRNA gene	Chr11:87535748-87563335 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002828	antisense lncRNA gene	Chr11:89582554-89606737 (+)
WSB/EiJ	MGP_WSBEiJ_G0002954	antisense lncRNA gene	Chr11:89895166-89921104 (+)

Homology

• Gene Tree
  Scpep1os
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  13 phenotype references
  

• All Mutations and Alleles
  35
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Gene trapped
  30
• Targeted
  3
• Genomic Mutations
  4 involving Scpep1os
• Find Mice (IMSR)
  6 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000087338 (Evidence)
• NCBI Gene
  73921

Representative Sequences			Length	Strain/Species
genomic	73921	NCBI Gene Model | MGI Sequence Detail	30134	C57BL/6J
transcript	NR_045955	RefSeq | MGI Sequence Detail	811	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 21

  Diseases 1

  Phenotypes 13
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Scpep1os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104055	Chr11:88796751-88796764 (+)	4 bp