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3930402G23Rik Gene Detail
Summary
  • Symbol
    3930402G23Rik
  • Name
    RIKEN cDNA 3930402G23 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1921277
    NCBI Gene: 665306
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:10974427-10978457 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 5.30 cM, cytoband A2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    193 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921277
 lncRNA gene Chr8:10974427-10978696 (-)
129S1/SvImJ MGP_129S1SvImJ_G0007298
 lincRNA gene Chr8:8111384-8115414 (-)
A/J MGP_AJ_G0007295
 lincRNA gene Chr8:7832879-7836909 (-)
AKR/J MGP_AKRJ_G0007266
 lincRNA gene Chr8:8069487-8073517 (-)
BALB/cJ MGP_BALBcJ_G0007273
 lincRNA gene Chr8:7983395-7987425 (-)
C3H/HeJ MGP_C3HHeJ_G0007216
 lincRNA gene Chr8:8238379-8242409 (-)
C57BL/6NJ MGP_C57BL6NJ_G0007443
 lincRNA gene Chr8:8456902-8460931 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0006646
 lincRNA gene Chr8:7356325-7360351 (-)
CAST/EiJ MGP_CASTEiJ_G0007119
 lincRNA gene Chr8:7947515-7954278 (-)
CBA/J MGP_CBAJ_G0007200
 lincRNA gene Chr8:8804141-8808171 (-)
DBA/2J MGP_DBA2J_G0007222
 lincRNA gene Chr8:7821552-7825582 (-)
FVB/NJ MGP_FVBNJ_G0007243
 lincRNA gene Chr8:7781837-7785867 (-)
LP/J MGP_LPJ_G0007303
 lincRNA gene Chr8:8027388-8031420 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0007220
 lincRNA gene Chr8:9125596-9129626 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0007446
 lincRNA gene Chr8:8084512-8088542 (-)
PWK/PhJ MGP_PWKPhJ_G0007061
 lincRNA gene Chr8:7799201-7803231 (-)
SPRET/EiJ MGP_SPRETEiJ_G0006968
 lincRNA gene Chr8:8008064-8012085 (-)
WSB/EiJ MGP_WSBEiJ_G0007179
 lincRNA gene Chr8:8112473-8116499 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotypes from 1 allele in 1 genetic background
    1 phenotype reference
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygous null mice show fasting induced lipid accumulation in the liver and elevated fasting liver triglyceride, cholesterol, triglyceride, diacylglyceride, and phosphocholine levels.
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    7
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    • All Sequences
      30
    • RefSeq
      2
    • UniProt
      1
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 665306 NCBI Gene Model | MGI Sequence Detail 4031 C57BL/6J ±  kb
    transcript NR_135302 RefSeq | MGI Sequence Detail 3084 C57BL/6  
    polypeptide Q9CYP8 UniProt | EBI | MGI Sequence Detail 157 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      1 Sequence
    Molecular
    Reagents
    less
    • All nucleic 7
      cDNA 7

      Microarray probesets 2
    References
    more
    • Summaries
      All 15
      Phenotypes 1
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:340239 Kim D, et al., Long non-coding RNA G23Rik attenuates fasting-induced lipid accumulation in mouse liver. Mol Cell Endocrinol. 2022 Jul 30;557:111722
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory