N4bp2os Gene Detail

Summary

• Symbol
  N4bp2os
• Name
  NEDD4 binding protein 2, opposite strand
• Synonyms
  1700022K14Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1921484
  NCBI Gene: 74234
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr5:65918334-65921722 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 33.80 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  106 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921484	lncRNA gene	Chr5:65918334-65921722 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015602	unclassified non-coding RNA gene	Chr5:65451240-65454628 (-)
A/J	MGP_AJ_G0015578	unclassified non-coding RNA gene	Chr5:62992126-62995535 (-)
AKR/J	MGP_AKRJ_G0015542	unclassified non-coding RNA gene	Chr5:65011700-65015096 (-)
BALB/cJ	MGP_BALBcJ_G0015540	unclassified non-coding RNA gene	Chr5:63685817-63690277 (-)
C3H/HeJ	MGP_C3HHeJ_G0015362	unclassified non-coding RNA gene	Chr5:65339626-65343023 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015994	unclassified non-coding RNA gene	Chr5:68133612-68142010 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013729	unclassified non-coding RNA gene	Chr5:59060060-59063446 (-)
CAST/EiJ	MGP_CASTEiJ_G0014918	unclassified non-coding RNA gene	Chr5:64435234-64438653 (-)
CBA/J	MGP_CBAJ_G0015343	unclassified non-coding RNA gene	Chr5:70344702-70350432 (-)
DBA/2J	MGP_DBA2J_G0015437	unclassified non-coding RNA gene	Chr5:63027756-63031153 (-)
FVB/NJ	MGP_FVBNJ_G0015444	unclassified non-coding RNA gene	Chr5:62192922-62196317 (-)
LP/J	MGP_LPJ_G0015518	unclassified non-coding RNA gene	Chr5:65937710-65941097 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015467	unclassified non-coding RNA gene	Chr5:73206457-73213458 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016036	unclassified non-coding RNA gene	Chr5:64664116-64667512 (-)
PWK/PhJ	MGP_PWKPhJ_G0014703	unclassified non-coding RNA gene	Chr5:62002701-62006152 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014491	unclassified non-coding RNA gene	Chr5:64005331-64009012 (-)
WSB/EiJ	MGP_WSBEiJ_G0015022	unclassified non-coding RNA gene	Chr5:64884596-64888953 (-)

Homology

• Gene Tree
  N4bp2os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  17 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving N4bp2os
• Find Mice (IMSR)
  3 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000106978 (Evidence)
• NCBI Gene
  74234

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106978	Ensembl Gene Model | MGI Sequence Detail	3389	C57BL/6J
transcript	ENSMUST00000202069	Ensembl | MGI Sequence Detail	2008	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 24

  Phenotypes 17
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707

TSS for N4bp2os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr51137	Chr5:65922375-65922393 (-)	-662 bp
Tssr51136	Chr5:65921754-65921765 (-)	-38 bp
Tssr51135	Chr5:65921693-65921748 (-)	1 bp
Tssr51134	Chr5:65921305-65921319 (-)	410 bp