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Gsdmcl1 Pseudogene Detail
Summary
  • Symbol
    Gsdmcl1
  • Name
    gasdermin C-like 1
  • Synonyms
    1700022L20Rik, Gsdmdc2
  • Feature Type
    pseudogene
  • IDs
    MGI:1921486
    NCBI Gene: 74236
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr15:63719158-63722791 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 27.96 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    93 from dbSNP Build 142
  • Strain Annotations
    11
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921486
 pseudogene Chr15:63719158-63727004 (+)
129S1/SvImJ MGP_129S1SvImJ_G0039800
 pseudogene Chr15:63295081-63299161 (+)
A/J MGP_AJ_G0039797
 pseudogene Chr15:60775760-60907787 (+)
AKR/J no annotation
BALB/cJ MGP_BALBcJ_G0039773
 pseudogene Chr15:61087938-61145496 (+)
C3H/HeJ MGP_C3HHeJ_G0039426
 pseudogene Chr15:62619864-62673984 (+)
C57BL/6NJ MGP_C57BL6NJ_G0040336
 pseudogene Chr15:65727086-65809132 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0036951
 pseudogene Chr15:57764681-57832845 (+)
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J MGP_DBA2J_G0039599
 pseudogene Chr15:60675838-60679847 (+)
FVB/NJ MGP_FVBNJ_G0039554
 pseudogene Chr15:59677209-59751927 (+)
LP/J MGP_LPJ_G0039633
 pseudogene Chr15:63208480-63213018 (+)
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0040439
 pseudogene Chr15:62911832-62952728 (+)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    24 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 74236 NCBI Gene Model | MGI Sequence Detail 3634 C57BL/6J ±  kb
transcript NR_108051 RefSeq | MGI Sequence Detail 1133 C57BL/6  
polypeptide Q9DA24 UniProt | EBI | MGI Sequence Detail 160 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR040460 Gasdermin, pore forming domain
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 3
References
more
  • Summaries
    All 38
    Diseases 1
    Phenotypes 24
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory