2310003L06Rik Gene Detail

Summary

• Symbol
  2310003L06Rik
• Name
  RIKEN cDNA 2310003L06 gene

• Feature Type
  protein coding gene
• IDs
  MGI:1921498
  NCBI Gene: 74248
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:88117318-88120729 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 43.56 cM, cytoband E2
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  175 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921498	protein coding gene	Chr5:88117318-88120729 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0029696	protein coding gene	Chr5:88948446-88951857 (+)
A/J	MGP_AJ_G0029663	protein coding gene	Chr5:85317237-85320648 (+)
AKR/J	MGP_AKRJ_G0029609	protein coding gene	Chr5:88140045-88143456 (+)
BALB/cJ	MGP_BALBcJ_G0029672	protein coding gene	Chr5:86238351-86241762 (+)
C3H/HeJ	MGP_C3HHeJ_G0029395	protein coding gene	Chr5:88536304-88539715 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0030127	protein coding gene	Chr5:92593711-92597122 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0027365	protein coding gene	Chr5:80913545-80917009 (+)
CAST/EiJ	MGP_CASTEiJ_G0028805	protein coding gene	Chr5:87941651-87945079 (+)
CBA/J	MGP_CBAJ_G0029364	protein coding gene	Chr5:95527127-95530538 (+)
DBA/2J	MGP_DBA2J_G0029509	protein coding gene	Chr5:85484392-85487787 (+)
FVB/NJ	MGP_FVBNJ_G0029469	protein coding gene	Chr5:84392606-84396017 (+)
LP/J	MGP_LPJ_G0029597	protein coding gene	Chr5:89357367-89360778 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0029498	protein coding gene	Chr5:100651138-100662921 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0030160	protein coding gene	Chr5:87705800-87709211 (+)
PWK/PhJ	MGP_PWKPhJ_G0028524	protein coding gene	Chr5:84482224-84485927 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0028362	protein coding gene	Chr5:87118724-87122130 (+)
WSB/EiJ	MGP_WSBEiJ_G0028884	protein coding gene	Chr5:88097845-88101255 (+)

Homology

• Gene Tree
  2310003L06Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving 2310003L06Rik
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  22 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• UniProt
  1

• Ensembl
  ENSMUSG00000007457 (Evidence)
• NCBI Gene
  74248

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000007457	Ensembl Gene Model | MGI Sequence Detail	3412	C57BL/6J
transcript	ENSMUST00000007601	Ensembl | MGI Sequence Detail	1603	Not Applicable
polypeptide	ENSMUSP00000007601	Ensembl | MGI Sequence Detail	495	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 18

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 2310003L06Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46962	Chr5:88117314-88117320 (+)	-1 bp