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Rnf138rt1 Gene Detail
Summary
  • Symbol
    Rnf138rt1
  • Name
    ring finger protein 138, retrogene 1
  • Synonyms
    1700045I19Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921514
    NCBI Gene: 74264
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:162543135-162544325 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 75.84 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    67 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921514
 protein coding gene ChrX:162543135-162544328 (-)
129S1/SvImJ MGP_129S1SvImJ_G0036246
 protein coding gene ChrX:161829292-161830482 (-)
A/J MGP_AJ_G0036216
 protein coding gene ChrX:161005310-161006500 (-)
AKR/J MGP_AKRJ_G0036144
 protein coding gene ChrX:166177868-166181107 (-)
BALB/cJ MGP_BALBcJ_G0036209
 protein coding gene ChrX:159006871-159008061 (-)
C3H/HeJ MGP_C3HHeJ_G0035915
 protein coding gene ChrX:162184393-162185583 (-)
C57BL/6NJ MGP_C57BL6NJ_G0036731
 protein coding gene ChrX:166575206-166576396 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0033553
 protein coding gene ChrX:152070420-152071613 (-)
CAST/EiJ MGP_CASTEiJ_G0035204
 protein coding gene ChrX:141152268-141153459 (-)
CBA/J MGP_CBAJ_G0035890
 protein coding gene ChrX:171393717-171394907 (-)
DBA/2J MGP_DBA2J_G0036056
 protein coding gene ChrX:159902721-159903911 (-)
FVB/NJ MGP_FVBNJ_G0035987
 protein coding gene ChrX:159038282-159039472 (-)
LP/J MGP_LPJ_G0036141
 protein coding gene ChrX:162984597-162985787 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0036019
 protein coding gene ChrX:180072072-180073262 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0036772
 protein coding gene ChrX:161319191-161320381 (-)
PWK/PhJ MGP_PWKPhJ_G0034902
 protein coding gene ChrX:137945571-137946762 (-)
SPRET/EiJ MGP_SPRETEiJ_G0034723
 protein coding gene ChrX:141630596-141631786 (-)
WSB/EiJ MGP_WSBEiJ_G0035339
 protein coding gene ChrX:159284336-159285526 (-)



Homology
more
  • Human Ortholog
    RNF138, ring finger protein 138
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RNF138, ring finger protein 138
  • Synonyms
    hNARF, HSD-4, NARF, STRIN
  • Links
    NCBI Gene ID: 51444
    neXtProt AC: NX_Q8WVD3
    UniProt: Q8WVD3

  • Chr Location
    18q12.1; chr18:32091874-32131561 (+)  GRCh38
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    12
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    730
  • Tissues
    15
  • cDNA Data
    8
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000083695 Ensembl Gene Model | MGI Sequence Detail 1191 C57BL/6J ±  kb
transcript ENSMUST00000059320 Ensembl | MGI Sequence Detail 1191 Not Applicable  
polypeptide ENSMUSP00000139291 Ensembl | MGI Sequence Detail 248 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR008598 Drought induced 19 protein type, zinc-binding domain
    IPR052498 E3 ubiquitin-protein ligase RNF138
    IPR034734 Zinc finger C2HC RNF-type
    IPR013083 Zinc finger, RING/FYVE/PHD-type
    IPR001841 Zinc finger, RING-type
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 2
Other
Accession IDs
less
MGI:2147932
References
more
  • Summaries
    All 20
    Developmental Gene Expression 1
    Gene Ontology 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory