1700095J03Rik Gene Detail

Summary

• Symbol
  1700095J03Rik
• Name
  RIKEN cDNA 1700095J03 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1921543
  NCBI Gene: 74293
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr7:109037825-109044107 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 57.21 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  262 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921543	lncRNA gene	Chr7:109037825-109044108 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015684	unclassified non-coding RNA gene	Chr7:112858219-112866019 (+)
A/J	MGP_AJ_G0015662	unclassified non-coding RNA gene	Chr7:110079320-110085623 (+)
AKR/J	MGP_AKRJ_G0015625	unclassified non-coding RNA gene	Chr7:112825259-112831532 (+)
BALB/cJ	MGP_BALBcJ_G0015623	unclassified non-coding RNA gene	Chr7:109775719-109781988 (+)
C3H/HeJ	MGP_C3HHeJ_G0015445	unclassified non-coding RNA gene	Chr7:112869837-112876106 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016078	unclassified non-coding RNA gene	Chr7:117551575-117557844 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013807	unclassified non-coding RNA gene	Chr7:111650432-111657099 (+)
CAST/EiJ	MGP_CASTEiJ_G0015000	unclassified non-coding RNA gene	Chr7:104398298-104404552 (+)
CBA/J	MGP_CBAJ_G0015426	unclassified non-coding RNA gene	Chr7:121395571-121401848 (+)
DBA/2J	MGP_DBA2J_G0015522	unclassified non-coding RNA gene	Chr7:108191342-108197607 (+)
FVB/NJ	MGP_FVBNJ_G0015528	unclassified non-coding RNA gene	Chr7:108036391-108042656 (+)
LP/J	MGP_LPJ_G0015602	unclassified non-coding RNA gene	Chr7:114395910-114402179 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015550	unclassified non-coding RNA gene	Chr7:123066195-123072456 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016120	unclassified non-coding RNA gene	Chr7:111846242-111852713 (+)
PWK/PhJ	MGP_PWKPhJ_G0014782	unclassified non-coding RNA gene	Chr7:100986837-100993153 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014571	unclassified non-coding RNA gene	Chr7:98531731-98538387 (+)
WSB/EiJ	MGP_WSBEiJ_G0015105	unclassified non-coding RNA gene	Chr7:112677537-112683792 (+)

Homology

• Gene Tree
  1700095J03Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Transgenic
  1
• Genomic Mutations
  2 involving 1700095J03Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000085407 (Evidence)
• NCBI Gene
  74293

Representative Sequences			Length	Strain/Species
genomic	74293	NCBI Gene Model | MGI Sequence Detail	6283	C57BL/6J
transcript	NR_152110	RefSeq | MGI Sequence Detail	1815	C57BL/6

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Phenotypes 5
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:348862 Lopez-Erauskin J, et al., Stathmin-2 loss leads to neurofilament-dependent axonal collapse driving motor and sensory denervation. Nat Neurosci. 2024 Jan;27(1):34-47

TSS for 1700095J03Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr68466	Chr7:109038333-109038344 (+)	514 bp
Tssr68467	Chr7:109038364-109038372 (+)	543 bp
Tssr68468	Chr7:109038399-109038410 (+)	580 bp
Tssr68469	Chr7:109038434-109038448 (+)	616 bp