4933439C10Rik Gene Detail

Summary

• Symbol
  4933439C10Rik
• Name
  RIKEN cDNA 4933439C10 gene
• Synonyms
  2610028M21Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1921726
  NCBI Gene: 74476
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:59396479-59402211 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 37.72 cM, cytoband B2
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  235 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921726	lncRNA gene	Chr11:59396479-59404473 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015175	unclassified non-coding RNA gene	Chr11:59347102-59355084 (+)
A/J	MGP_AJ_G0015149	unclassified non-coding RNA gene	Chr11:57075685-57084253 (+)
AKR/J	MGP_AKRJ_G0015112	unclassified non-coding RNA gene	Chr11:58988586-58996795 (+)
BALB/cJ	MGP_BALBcJ_G0015111	unclassified non-coding RNA gene	Chr11:57428118-57436103 (+)
C3H/HeJ	MGP_C3HHeJ_G0014935	unclassified non-coding RNA gene	Chr11:58852459-58860029 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015568	unclassified non-coding RNA gene	Chr11:61222550-61230531 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013312	unclassified non-coding RNA gene	Chr11:54320144-54327999 (+)
CAST/EiJ	MGP_CASTEiJ_G0014488	unclassified non-coding RNA gene	Chr11:58995581-59003429 (+)
CBA/J	MGP_CBAJ_G0014914	unclassified non-coding RNA gene	Chr11:63899741-63907473 (+)
DBA/2J	MGP_DBA2J_G0015007	unclassified non-coding RNA gene	Chr11:56745135-56753122 (+)
FVB/NJ	MGP_FVBNJ_G0015019	unclassified non-coding RNA gene	Chr11:56398772-56406749 (+)
LP/J	MGP_LPJ_G0015088	unclassified non-coding RNA gene	Chr11:59945658-59953641 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015045	unclassified non-coding RNA gene	Chr11:65018585-65026567 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015607	unclassified non-coding RNA gene	Chr11:59013887-59021871 (+)
PWK/PhJ	MGP_PWKPhJ_G0014280	unclassified non-coding RNA gene	Chr11:57331989-57339731 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014067	unclassified non-coding RNA gene	Chr11:58800991-58810558 (+)
WSB/EiJ	MGP_WSBEiJ_G0014591	unclassified non-coding RNA gene	Chr11:58692902-58700878 (+)

Homology

• Gene Tree
  4933439C10Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  2
• Genomic Mutations
  1 involving 4933439C10Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  20

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000072893 (Evidence)
• NCBI Gene
  74476

Representative Sequences			Length	Strain/Species
genomic	74476	NCBI Gene Model | MGI Sequence Detail	5733	C57BL/6J
transcript	NR_015585	RefSeq | MGI Sequence Detail	2227	C57BL/6
polypeptide	Q3TEA0	UniProt | EBI | MGI Sequence Detail	155	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 21

  cDNA 21

  
  

  Microarray probesets 4

Other
Accession IDs

MGI:1923624

References

• Summaries
  All 19

  Phenotypes 4
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 4933439C10Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr101798	Chr11:59396462-59396509 (+)	7 bp