4930405A21Rik Gene Detail

Summary

• Symbol
  4930405A21Rik
• Name
  RIKEN cDNA 4930405A21 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922096
  NCBI Gene: 74846
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:156556460-156562829 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 77.68 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  249 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922096	lncRNA gene	Chr2:156556459-156562829 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015481	unclassified non-coding RNA gene	Chr2:161631270-161639001 (-)
A/J	MGP_AJ_G0015458	unclassified non-coding RNA gene	Chr2:155198107-155204534 (-)
AKR/J	MGP_AKRJ_G0015422	unclassified non-coding RNA gene	Chr2:159705084-159713601 (-)
BALB/cJ	MGP_BALBcJ_G0015421	unclassified non-coding RNA gene	Chr2:155486870-155493180 (-)
C3H/HeJ	MGP_C3HHeJ_G0015244	unclassified non-coding RNA gene	Chr2:160042743-160049095 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015875	unclassified non-coding RNA gene	Chr2:166346648-166354636 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013613	unclassified non-coding RNA gene	Chr2:148657690-148664027 (-)
CAST/EiJ	MGP_CASTEiJ_G0014796	unclassified non-coding RNA gene	Chr2:160390452-160398824 (-)
CBA/J	MGP_CBAJ_G0015225	unclassified non-coding RNA gene	Chr2:172413988-172422489 (-)
DBA/2J	MGP_DBA2J_G0015319	unclassified non-coding RNA gene	Chr2:154367721-154374094 (-)
FVB/NJ	MGP_FVBNJ_G0015326	unclassified non-coding RNA gene	Chr2:152736268-152742535 (-)
LP/J	MGP_LPJ_G0015397	unclassified non-coding RNA gene	Chr2:161753610-161759973 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015350	unclassified non-coding RNA gene	Chr2:176307375-176315161 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015915	unclassified non-coding RNA gene	Chr2:159568258-159576522 (-)
PWK/PhJ	MGP_PWKPhJ_G0014584	unclassified non-coding RNA gene	Chr2:153871358-153878093 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014372	unclassified non-coding RNA gene	Chr2:158518264-158525549 (-)
WSB/EiJ	MGP_WSBEiJ_G0014903	unclassified non-coding RNA gene	Chr2:160455759-160464596 (-)

Homology

• Gene Tree
  4930405A21Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  15
• Gene trapped
  15
• Find Mice (IMSR)
  18 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000086638 (Evidence)
• NCBI Gene
  74846

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086638	Ensembl Gene Model | MGI Sequence Detail	6370	C57BL/6J
transcript	ENSMUST00000139042	Ensembl | MGI Sequence Detail	994	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 4930405A21Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr27056	Chr2:156564307-156564314 (-)	-1,482 bp
Tssr27055	Chr2:156562690-156562748 (-)	110 bp