Saxo1os Gene Detail

Summary

• Symbol
  Saxo1os
• Name
  stabilizer of axonemal microtubules 1, opposite strand
• Synonyms
  4930457A20Rik, Fam154aos

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1922138
  NCBI Gene: 74888
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr4:86476683-86478041 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 40.69 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  131 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922138	antisense lncRNA gene	Chr4:86476681-86478041 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003914	antisense lncRNA gene	Chr4:86321078-86322431 (+)
A/J	MGP_AJ_G0003894	antisense lncRNA gene	Chr4:83313754-83315107 (+)
AKR/J	MGP_AKRJ_G0003871	antisense lncRNA gene	Chr4:85407183-85408541 (+)
BALB/cJ	MGP_BALBcJ_G0003880	antisense lncRNA gene	Chr4:83497033-83498386 (+)
C3H/HeJ	MGP_C3HHeJ_G0003827	antisense lncRNA gene	Chr4:86061829-86063182 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004028	antisense lncRNA gene	Chr4:89589099-89590457 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003519	antisense lncRNA gene	Chr4:79407484-79408825 (+)
CAST/EiJ	MGP_CASTEiJ_G0003791	antisense lncRNA gene	Chr4:83962789-83964168 (+)
CBA/J	MGP_CBAJ_G0003820	antisense lncRNA gene	Chr4:92379689-92381042 (+)
DBA/2J	MGP_DBA2J_G0003837	antisense lncRNA gene	Chr4:83057546-83058899 (+)
FVB/NJ	MGP_FVBNJ_G0003855	antisense lncRNA gene	Chr4:82045578-82046936 (+)
LP/J	MGP_LPJ_G0003916	antisense lncRNA gene	Chr4:86656163-86657516 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003843	antisense lncRNA gene	Chr4:97433002-97434360 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004023	antisense lncRNA gene	Chr4:85486854-85488207 (+)
PWK/PhJ	MGP_PWKPhJ_G0003746	antisense lncRNA gene	Chr4:81402620-81403965 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003692	antisense lncRNA gene	Chr4:83037492-83038866 (+)
WSB/EiJ	MGP_WSBEiJ_G0003826	antisense lncRNA gene	Chr4:85670983-85672332 (+)

Homology

• Gene Tree
  Saxo1os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  2
• Endonuclease-mediated
  2
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  5 involving Saxo1os
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000085108 (Evidence)
• NCBI Gene
  74888

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085108	Ensembl Gene Model | MGI Sequence Detail	1359	C57BL/6J
transcript	ENSMUST00000131790	Ensembl | MGI Sequence Detail	628	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 14

  Developmental Gene Expression 1

  Phenotypes 5
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48

TSS for Saxo1os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr1220	Chr4:86476631-86476635 (+)	-50 bp
Tssr37727	Chr4:86476667-86476685 (+)	-7 bp