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Ccdc171 Gene Detail
Summary
  • Symbol
    Ccdc171
  • Name
    coiled-coil domain containing 171
  • Synonyms
    4930418J05Rik, 4930473A06Rik, A330015D16Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1922152
    NCBI Gene: 320226
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:83443782-83782907 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 39.46 cM, cytoband C3
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    8696 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922152
 protein coding gene Chr4:83443649-83784380 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028405
 protein coding gene Chr4:83131666-83469176 (+)
A/J MGP_AJ_G0028366
 protein coding gene Chr4:80230496-80560893 (+)
AKR/J MGP_AKRJ_G0028315
 protein coding gene Chr4:82328772-82663269 (+)
BALB/cJ MGP_BALBcJ_G0028386
 protein coding gene Chr4:80465572-80801850 (+)
C3H/HeJ MGP_C3HHeJ_G0028101
 protein coding gene Chr4:82926786-83270050 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028825
 protein coding gene Chr4:86413866-86764313 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026125
 protein coding gene Chr4:76186727-76536523 (+)
CAST/EiJ MGP_CASTEiJ_G0027542
 protein coding gene Chr4:80833738-81178249 (+)
CBA/J MGP_CBAJ_G0028070
 protein coding gene Chr4:89086454-89424375 (+)
DBA/2J MGP_DBA2J_G0028219
 protein coding gene Chr4:80027228-80354333 (+)
FVB/NJ MGP_FVBNJ_G0028185
 protein coding gene Chr4:79022263-79356544 (+)
LP/J MGP_LPJ_G0028319
 protein coding gene Chr4:83497417-83829996 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028214
 protein coding gene Chr4:94158315-94525274 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028862
 protein coding gene Chr4:82382391-82709993 (+)
PWK/PhJ MGP_PWKPhJ_G0027265
 protein coding gene Chr4:78368133-78706883 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027090
 protein coding gene Chr4:79919362-80261945 (+)
WSB/EiJ MGP_WSBEiJ_G0027618
 protein coding gene Chr4:82544471-82882276 (+)



Homology
more
  • Human Ortholog
    CCDC171, coiled-coil domain containing 171
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCDC171, coiled-coil domain containing 171
  • Synonyms
    bA536D16.1, bA778P13.1, C9orf93
  • Links
    NCBI Gene ID: 203238
    neXtProt AC: NX_Q6TFL3
    UniProt: Q6TFL3

  • Chr Location
    9p22.3; chr9:15552885-16108926 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice that either homozygous or heterozygous for an ENU-induced single point mutation exhibit decreased mature B cell number, decreased IgD level, and increased IgM level.
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    722
  • Tissues
    2
  • cDNA Data
    19
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000052407 Ensembl Gene Model | MGI Sequence Detail 339126 C57BL/6J ±  kb
    transcript ENSMUST00000231339 Ensembl | MGI Sequence Detail 4549 Not Applicable  
    polypeptide ENSMUSP00000155912 Ensembl | MGI Sequence Detail 1332 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 20
      Genomic 1
      cDNA 19

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:1924120, MGI:2443621
    References
    more
    • Summaries
      All 30
      Developmental Gene Expression 1
      Phenotypes 8
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory