Platr14 MGI Mouse Gene Detail - MGI:1922209 - pluripotency associated transcript 14

Symbol

Platr14
Name

pluripotency associated transcript 14
Synonyms

4930500J02Rik

Feature Type

lncRNA gene
IDs

MGI:1922209
NCBI Gene: 74959
Alliance

gene page
Transcription Start Sites

1 TSS

Sequence Map

Chr2:104389529-104401774 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 2, 54.82 cM
Mapping Data

1 experiment

SNPs within 2kb

450 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922209	lncRNA gene	Chr2:104389493-104401774 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015450	unclassified non-coding RNA gene	Chr2:106675895-106689593 (+)
A/J	MGP_AJ_G0015426	unclassified non-coding RNA gene	Chr2:102220396-102232612 (+)
AKR/J	MGP_AKRJ_G0015390	unclassified non-coding RNA gene	Chr2:105001915-105014129 (+)
BALB/cJ	MGP_BALBcJ_G0015389	unclassified non-coding RNA gene	Chr2:102500892-102513108 (+)
C3H/HeJ	MGP_C3HHeJ_G0015212	unclassified non-coding RNA gene	Chr2:105327677-105341040 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015843	unclassified non-coding RNA gene	Chr2:110180166-110192442 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013582	unclassified non-coding RNA gene	Chr2:98033310-98046058 (+)
CAST/EiJ	MGP_CASTEiJ_G0014764	unclassified non-coding RNA gene	Chr2:105828505-105841605 (+)
CBA/J	MGP_CBAJ_G0015193	unclassified non-coding RNA gene	Chr2:113952336-113964556 (+)
DBA/2J	MGP_DBA2J_G0015287	unclassified non-coding RNA gene	Chr2:101770718-101782923 (+)
FVB/NJ	MGP_FVBNJ_G0015294	unclassified non-coding RNA gene	Chr2:100755388-100767863 (+)
LP/J	MGP_LPJ_G0015365	unclassified non-coding RNA gene	Chr2:106780733-106793150 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015318	unclassified non-coding RNA gene	Chr2:117830882-117843996 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015883	unclassified non-coding RNA gene	Chr2:105199749-105212011 (+)
PWK/PhJ	MGP_PWKPhJ_G0014552	unclassified non-coding RNA gene	Chr2:101301366-101313771 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014340	unclassified non-coding RNA gene	Chr2:104434828-104447266 (+)
WSB/EiJ	MGP_WSBEiJ_G0014871	unclassified non-coding RNA gene	Chr2:105933864-105948228 (+)

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Gene Tree

Platr14

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Phenotype Summary

6 phenotype references

All Mutations and Alleles

9
Chemically induced (other)

1
Gene trapped

7
Radiation induced

1
Genomic Mutations

2 involving Platr14
Find Mice (IMSR)

4 strains or lines available

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All GO Annotations

2
GO References

1

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

2

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

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All Sequences

37
RefSeq

2

Ensembl

ENSMUSG00000086454 (Evidence)
NCBI Gene

74959

Representative Sequences				Length	Strain/Species	Flank
	genomic	74959	NCBI Gene Model \| MGI Sequence Detail	12246	C57BL/6J	± kb
	transcript	NR_040323	RefSeq \| MGI Sequence Detail	887	C57BL/6

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All nucleic 2

cDNA 2

Summaries

All 15

Gene Ontology 1

Phenotypes 6
Earliest

J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
Latest

J:241492 Bergmann JH, et al., Regulation of the ESC transcriptome by nuclear long noncoding RNAs. Genome Res. 2015 Sep;25(9):1336-46

TSS for Platr14:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19216	Chr2:104389523-104389533 (+)	-1 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 11/12/2024 MGI 6.24