Nudt12os Gene Detail

Summary

• Symbol
  Nudt12os
• Name
  nudix hydrolase 12, opposite strand
• Synonyms
  4930505H01Rik, nudix (nucleoside diphosphate linked moiety X)-type motif 12, opposite strand

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1922289
  NCBI Gene: 75039
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:59303246-59331976 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 30.63 cM, cytoband E1.1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  1054 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922289	antisense lncRNA gene	Chr17:59303246-59331976 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003418	antisense lncRNA gene	Chr17:60794028-60824436 (+)
A/J	MGP_AJ_G0003396	antisense lncRNA gene	Chr17:59083456-59112342 (+)
AKR/J	MGP_AKRJ_G0003377	antisense lncRNA gene	Chr17:59856811-59885514 (+)
BALB/cJ	MGP_BALBcJ_G0003385	antisense lncRNA gene	Chr17:58937358-58966330 (+)
C3H/HeJ	MGP_C3HHeJ_G0003335	antisense lncRNA gene	Chr17:60601826-60631512 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003525	antisense lncRNA gene	Chr17:63124423-63154960 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003039	antisense lncRNA gene	Chr17:55484759-55513460 (+)
CAST/EiJ	MGP_CASTEiJ_G0003297	antisense lncRNA gene	Chr17:60880718-60913508 (+)
CBA/J	MGP_CBAJ_G0003331	antisense lncRNA gene	Chr17:65649276-65682693 (+)
DBA/2J	MGP_DBA2J_G0003340	antisense lncRNA gene	Chr17:57775253-57803998 (+)
FVB/NJ	MGP_FVBNJ_G0003358	antisense lncRNA gene	Chr17:57354535-57383364 (+)
LP/J	MGP_LPJ_G0003412	antisense lncRNA gene	Chr17:61485162-61513864 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003346	antisense lncRNA gene	Chr17:65054557-65085057 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003527	antisense lncRNA gene	Chr17:60237260-60265973 (+)
PWK/PhJ	MGP_PWKPhJ_G0003256	antisense lncRNA gene	Chr17:57103852-57133242 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003201	antisense lncRNA gene	Chr17:56948575-56981281 (+)
WSB/EiJ	MGP_WSBEiJ_G0003334	antisense lncRNA gene	Chr17:60830110-60859817 (+)

Homology

• Gene Tree
  Nudt12os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  2
• UniProt
  2

• Ensembl
  ENSMUSG00000086594 (Evidence)
• NCBI Gene
  75039

Representative Sequences			Length	Strain/Species
genomic	75039	NCBI Gene Model | MGI Sequence Detail	28731	C57BL/6J
transcript	NR_145522	RefSeq | MGI Sequence Detail	939	C57BL/6
polypeptide	Q3V0W3	UniProt | EBI | MGI Sequence Detail	130	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 3

References

• Summaries
  All 14

  Phenotypes 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for Nudt12os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr145530	Chr17:59303238-59303273 (+)	10 bp